HsaINT0161427 @ hg19
Intron Retention
Gene
ENSG00000116266 | STXBP3
Description
syntaxin binding protein 3 [Source:HGNC Symbol;Acc:11446]
Coordinates
chr1:109340767-109342927:+
Coord C1 exon
chr1:109340767-109340859
Coord A exon
chr1:109340860-109342841
Coord C2 exon
chr1:109342842-109342927
Length
1982 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
TTAACTCTTTCCTTCCTTAGGAT
3' ss Score
11.69
Exon sequences
Seq C1 exon
TCTCAACAAGGCAAACCGTTAAGAAAGGATCGGTCTGCAGAAGAAACTTTTCAGCTCTCTCGGTGGACACCTTTTATCAAAGATATTATGGAG
Seq A exon
GTAAAAATCATTAAAATGTTTTTTTCTACCTGAGTGCCCTCTTTAGAGTATTCTTTACTTTTTGTAGTTTATGTCAGTCTGAGTATATGTATTGGGCAGGAAGTTTCTGCAGTGGTTGGAGGCTTCACAAAAAAGCCTGTATCTGGGAAACTCTTGAAGATTCTTCTTCTTTTTTTTTTTTTTTTTTTTTCTTTTTGAGACAGAGTGTCACTCTATCACCCAGGCTGGAGTGCAGTGGCACAGTCTTGGCTCACTGCAACCTTCGCCTCCCAGGTTCCAGCAATTCTCTTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACACGCCACCATGCCTGGCTAATTTTTGTATTTTTAGTGGAGACAGGGTTTCACTATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCGCCCGGCTGAAGATTCTTTTCTTAAAGACCTCAGACAAACTCACACCACTGACTGTTTCAAAAAAAATAAAATAAACACATATATGCTTTATAAAAAATACTGCTTTGTTTTAATAACTGTATGTGGCAAAATATAATTTATTTGAATGAAAGTTCAACAAAATAACATTTGTATGTGGACCACTATTAAAAAGTATTAGATGCCAATATTCTTGGAAATGTTTTTGGATTAAAATGTAAACTTCATTATAGTTTGCTGTCAGATGAATCATGCCTTTAATACTGTTTACACTTAGAGAACATTATTCAATTATAGGAAATTATAAAATGAGCTAATTTTAAAATTATGAGCTTAATAAAATCATGACACTGATTCTTCGGTCATGATCATATAGTTTTTATTCCCCTTTTCCTTTGACTTAAACCCCAGTTTATACTTTCTTTGGGGAGCTAATTTGGTACAGTGCATAACTATGATTTCTCTGTTTTGCTTGGCTAATTTTATGTTATTCACACATGCTTAAACATATATGAAAAATCTAAAGAATTTAGACTTTGTTTTCTCTAACATAAGAATTTTTTTTCCTTTCTCACAGGGATGATATAGAACTAAGTAGTTTCTTATGGCTAGTTTTTTGTTTTTTTGTTTTTAAACATATTCCTAATCAGTTTACCATGGCTAGTATTTGTAAAATAAGAAATGACTTTCTTGAACCCCTTAACAAAGATTTGCATGTTAAATTCAGAAAATACACATTTGGATCCATGACAGTCTTAGGCCTTTAGAATTTCTCCTGAAACTTGATTTCCTCCCTTCTTGCAGTCTTACTGAAATATTCTTGGACTACTGAGTACTTTGTGCCCAATCCATGTGCCCACTTGTTAATACTACTTGTACTACCATGCCGTAAAGCAGTGGTCTCCATACTTTTCAGTTCATGCACACCTAACCATAAAAAAAATGTGAGCATGAACCTATTTACTTATAAGTTAAGCATTACTGTAATAAAAAATATATAATCTATGTATACAGTATATTTATATACATACATATATCATAAAATCTAACATTGAAAAAAGGGAAAATTTTAAAGAATAAAATGAAAAGGAAAACTTCCCATATCCCATTGAATTGTCTTGAGTACCCCTAGGCCATAGCAGTAGTAGCTATGAAGGGCAAAGCTTTAGAAGTGTGTCACGACTGGAATAATGATTAGAGACCCCCGGCACCATAGAACTAAAGGCTCTGATAAGGTGCCTGGAATCCTTATAACAGCATGGGGACCCTCCAAATGAAGAAAGGGAGTCATGCAGCAAATATTGGTGTAATAAGTAAATGATTTCACTGATTTTTGAAGGAAATAAGGTTTGTGAGTTTCAAAGAAAAGACTAATCTTATACTAAATATTTATGTCTAAGGTTCCTCAATTGCAAATGCAAGTTTTGACCTTTATGCCAAACAAAGTCCTGCAATTTACAATTTTATTGATGGAATTAACTCTTTCCTTCCTTAG
Seq C2 exon
GATGCTATTGATAATAGATTAGATTCAAAAGAATGGCCATATTGTTCCCAGTGTCCAGCAGTATGGAATGGTTCAGGAGCTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116266-STXBP3:NM_007269:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.258 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(5.5=100)
A:
NA
C2:
PF0099518=Sec1=FE(5.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)