BtaINT0143565 @ bosTau6
Intron Retention
Gene
ENSBTAG00000030384 | SURF1
Description
surfeit 1 [Source:HGNC Symbol;Acc:HGNC:11474]
Coordinates
chr11:104317838-104318915:-
Coord C1 exon
chr11:104318864-104318915
Coord A exon
chr11:104317972-104318863
Coord C2 exon
chr11:104317838-104317971
Length
892 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CATGCTGTGACATCTCCTAGGGT
3' ss Score
7.07
Exon sequences
Seq C1 exon
GCCCCGGCCAGCGTCGTCTGGAGGAGCGTCCTGGGGATCGCCCCGCGCGCAG
Seq A exon
GTGAGTTCTCGGGCAGGGACGCCCCAGGCGCCCCGGGGAACCGTTTCAGTCCGTGCGTCCACTTTGCTGGGGGCGAGGGCGTCGCGATAAGCTCTGAAACTGCCGCCCCAGCCTCGGGAGTCAGACCCTGGGTGCGCGCGCGCTGTTCTCGGTGCTGCCGCCCTCCCACCGCACCCGGCCAAGTGCAGCCACTGCCTGAGGGCCCCTGAGGCTGAGGCGGGGCCGACCCGAGACCGAAGCCGTCTGGGATCCTAAAGGAAAGCATGGCTTATCTGTACAGTTTGCATGTGGTCCCCGAGGTTCAGCAAAGGATGTTTGTGTATAGAGCGCTGTGCACCCTGGAAAGGCGGCTGTAAGTCTACTCCAGGCCTGCCTTTTTTTAACCATCCCTAAGACCTAGGATGCTTTCCGTTGATGGAACTCACGCTCTGAGAGCTTAAAGGTATCTCTTGTGTACGTTTTTCCAACTTTAAATTTATGAGCGATTATCGTTCTGAGAGCTCTGTAAAGCACTCTCCTGAAGTGTATCACGTTCTCTCTCTGCAGAGCATGGGCAAGTCCTTGAGTCTAAGTGACAGGATACGTCTCAGCATGTCCTTGCAGGAAAGCCATGAGGTGGTTCCATGAGTTACCCAGGGTCATGTGGGTGGCAGAGCCAGGCCCTAGTCGCTGGATCTCATTCAGTCGGTGACTGTCCGCTGAATGCGCCGGGCGCTGGGTTTGGAGCGGGCTGGACGCAGGTGCTGCTGGTTGGCTGCGACTGCCCGTGGTGGCCCGGCCCTCCTCCTGTTCCACGTTCTCTCAGGCAGCCAGGGCAGCTTCGAGGAACTGGCCACTCCAGTTTTTCGTTCCAGGGCTTCTGGCCCCATGCCCATGCTGTGACATCTCCTAG
Seq C2 exon
GGTTGGCCTGGAGGCCCCGCAGGTGTGGCAGCTCTTCAGCCGAAGCAACTGCCACAAAAACCGAAGATGAGTCCTTCCTCCGCTGGTTTCTGCTTCTCATTCCTGTGACTGCCTTTGGCCTGGGGACGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030384:ENSBTAT00000042893:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.267
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0210410=SURF1=PU(6.4=31.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development