HsaINT0161992 @ hg38
Intron Retention
Gene
ENSG00000148290 | SURF1
Description
SURF1, cytochrome c oxidase assembly factor [Source:HGNC Symbol;Acc:HGNC:11474]
Coordinates
chr9:133354824-133356320:-
Coord C1 exon
chr9:133356269-133356320
Coord A exon
chr9:133354958-133356268
Coord C2 exon
chr9:133354824-133354957
Length
1311 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AGTGTTGTGAAACTCTCCAGGGG
3' ss Score
3.99
Exon sequences
Seq C1 exon
GCCCCGGCCAGCGCCGCCTGGAGGAGCGTCCTCAGGGTCTCCCCGCGCCCAG
Seq A exon
GTGAGGGCTGCAGGCCGGGCTGTGATCCAGGCGCCTGGGCAGAGCCACCTGCTGTCTGCCCTGCACTTTGAAGGGTTGTCGTGGGGATTGAAATGAACCAACTGCCGGCTGAGCGGAGGCTCCCTGGGAGTGACAAGTTCCGTATTAAAATGCTTTCAGTGGAATTGTGGTCGTGTGCCGGGCATGTAGCGAGCGCTTTGTCCTCACAACGCGAGAGGTAGCTCCTTGGTCGTTCCCCTGTTACAGAGAAGGCTCGAGAGTTACTTCCGAACGTCCCATCCAGCTAATGGGTGGCCAGCCCAGGCTGAAAGCCCAGGGCTCTGAAAGTAAAGCGTATCTAACCACCGCGGCTTACGTGTTCCTCTCAGTGTGCAGCACAGGGCTGTTTTGCCGTGTGTAGAGTGCTGTGCAAGCCTGCCCCAGGCCTGCCTTTTTATAAAAAAAAAAAAAAAAATAGTATCCGCAAGGCCCCTGGTGCTTTTCAGCGGATGGAACTCATCCTCTGAGAGCTTAAAGGCACTTTCTGTGTACATTCTTCCCTCTTTACATTTACGATGAGTTGTAAAAATGGAAAGCTGTTAAGAGAGCTCTGTGAGCCATTACTGAATTGATATATTTTTCTACATAACACAACAACCACTAGTGCCTGACTAAGCTACTTAGTAACTGTAGCTGCTTATTTTTTATTTTTTGAGACAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAGTGGCGCAATCTCGGCTTACAGCAACCACCTCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGAAGCACCATCGTGCTCAGCTAATTTTTGCATTTTTTTGTAGAGATGGGGTTTCTGCATGTTGGTCAGGCTGGTCTCGAACTCCTGATCTCGTGATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCGGCCAACTGTAGCTGCTTATTAAATGCATTTTGAATGGATGAATGGTGCATCTTAGTGCAGTGGAATACATCTAGATTCTTGAGTAAAAAGGCATGAGTTACTCAGGGTCGTGGTTGGTGGTCAAACCGGCACTGAGCCCTAGATCCCACTTACTCACTTGGCAGACGTACTGTGTGTGCCTTGTTCTGGGCACCGGGTTAGGAGCTGGGCTGGATACAGGTGCTGCTAGTTGGCTCTAGGCAGCAGGTTTTGATTGGCAGTACTGGAGTCTGTCTTGGAACGGGCTGCTCCAGGTCTGTGTTCGAGGGCTTCTGGCTCCATGTCAGTGTTGTGAAACTCTCCAG
Seq C2 exon
GGGTGGCCTGGAGGCCAAGCAGATGTGGCAGTTCTGCAGCAGAAGCATCTGCCACAAAAGCGGAAGATGACTCCTTTCTTCAGTGGGTCCTGCTCCTCATCCCTGTGACTGCCTTTGGCTTGGGGACATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148290:ENST00000371974:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.067
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0210410=SURF1=PU(6.4=31.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains