BtaINT0143722 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020243 | SVEP1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:15985]
Coordinates
chr8:101661907-101663039:-
Coord C1 exon
chr8:101662926-101663039
Coord A exon
chr8:101662109-101662925
Coord C2 exon
chr8:101661907-101662108
Length
817 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAA
5' ss Score
3.28
3' ss Seq
TCATCCTCATCCATCCCCAGGCC
3' ss Score
9.23
Exon sequences
Seq C1 exon
GTCAGCTGTGTGAAGACAATGTAAATGAGTGCATCTCCAGTCCTTGTTTAAATAAAGGAACTTGCGTTGATGGCCTGGCTGGTTATCACTGCACATGTGTGAAAGGATACATGG
Seq A exon
GTAAAATGTTTCCGTTCTTCCTAGTTGTCTTAAAGAGTTCCATAAAGCCTCACAAATCATGATATTTACTGTTATACAAGCGACATAAGTTAATGTTAATTATCTGATTTTATAACTGCACCATGATTTTATAAGTGAAAGTCCTTATTTTTGAGGAAATTCACACTGAACTACTTAGAGGTAAAAGAGCATCAGGTCTAAAATTGACTAAAGCAATTCATAAAAAGTAATATGTTCTTGTGCATGTGTGTGTATATATGTATATGTAGGGACAGAAAGAGAAGACTTGAGTTTATATGCTAAGATAAACACTCAAGAAGTAACTGGAGATGATAAAATGTTATTATAAGTGAATGCTAAATAATAGAATGTGTGTGTATGTGTGTGTATATATATATATTATTATATATATTATATATACACAAACACACATATATAACTGGTAAAGAATAAGTCCAAAACCGAAAATGATCAGTGACAGAAAGAGGCAAGATCAAAGATACAGATGAACATTTTGGACTATATGTGCTAGTTTCATTTTTGTTTAAACATTTTCTCAATTAGGCGTCCATTGCTAATGTTAGTTCCAGAAAAAGGTAAGGTTAAAAGAGCAGATTATCAAAAATACAGTCCTAAAATGATTTAGAAAAGCCAGAGCTTATTTAAGAATAGGTCCCAAACCTGTTTGGTCTCCCAGTGGCTCCACAGCCTCCATTTCATCCTTTCGAAGCAGCATCCTCCAAGGAGTCCTCACCTTGATTCCAGTTTTCCAAAGGGGTTAACCTTTGGGCTGTCTCTCATCCTCATCCATCCCCAG
Seq C2 exon
GCCTACACTGTGAAACAGAAGTCAATGAATGCCAGTCAAGCCCATGTTTAAATAACGCAGTCTGTGAAGATCAGCTTGGGGGGTTCTTGTGCAAATGCCCACCTGGATTTTTGGGCACCCGGTGTGACATAAACATGGATGAGTGTCTCAGCCAACCATGCAAAAATGGAGCTACCTGCAAGGACGGTGCCAATGGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020243:ENSBTAT00000001939:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(6.5=5.1),PF0000822=EGF=PU(92.1=89.7)
A:
NA
C2:
PF0000822=EGF=PD(5.3=2.9),PF0000822=EGF=WD(100=45.6),PF0000822=EGF=PU(61.3=27.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCTGTGTGAAGACAATGT
R:
CCATTGGCACCGTCCTTGC
Band lengths:
310-1127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]