GgaINT0062187 @ galGal4
Intron Retention
Gene
ENSGALG00000015721 | SVEP1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:15985]
Coordinates
chrZ:66414733-66415791:-
Coord C1 exon
chrZ:66415678-66415791
Coord A exon
chrZ:66414935-66415677
Coord C2 exon
chrZ:66414733-66414934
Length
743 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
CTTTGTTCTTTTCTTTCTAGGTG
3' ss Score
13.27
Exon sequences
Seq C1 exon
GTCTCTTGTGTGAGAAAGATATAAATGAATGTACTTCTAGTCCATGTTTGAATGGAGGCCACTGTGTCGACGAGAGGAATGGTTACCACTGTACTTGTGCAAAAGGATTCACAG
Seq A exon
GTACACTATTTCTTGTATGAGCCAGATTCACTCTTTCTTACCCAAAAAGATGTCTTCTTTCCCTGACGAAAGTATTTCAGTCTCACTGCTATGTGTTACATATGTGGTATGTTGATTTGGGTGTATTAGCTTCCGCTGGTTCATGTAGTCTCTGAGAGTCCTTGTAGTGCAGCACTGTGGCTTCAGCAGACCTACTGTGTGATTGGTCTTCCACTCCACACCTTGCCAATAACTTCCTGTGTGGCTGTTGAGGAAAGAACAGTGCAATTCACATGAATTGAATTATTTTGTTTTAAAAAAGTCAAATCAAGTGCAGTTCTTTATTCTTCAGATCTTGTAACACAGAGCCTCTTTCACCAGAAATCCTCAATTTGTGTGTCATGATACTTTTCACTTTCCACATTTACTTATTATATTTAAGGTTCAAACTTACTGTCTTCTGTAGCAGATTTCCATTAGTTGATCAGAGTAGTTACTCGGATTATTTCCTGATTCAGCCCAAACTACTCACAATATCCATTTAGATTCCTGACATAAGTGTTAATTTTTACAACTACAGAGATGGCTCCTGTAATATTTCTGTGCCCAATTTACCTCAGATAGTGGAGTAAATCCCAGTCCTGCTACCCCAGTATTTTTAGATGTTTTCTAGAAAGTAGGCAACAATCTTTAGAAACCAGGAATGGTTTGGCGACCTTTGCTTAAATCAGAACGCAGCTGCGACTTTGTTCTTTTCTTTCTAG
Seq C2 exon
GTGCTCACTGTGAATCAGAGGTCAACGAATGCCTTTCAAACCCATGTCTTAACAGAGCTGTTTGTGAAGATCGAGTTGGCGGTTTCTCCTGCAAGTGCCTCCCAGGTTTTACTGGTGTCTTGTGTGAAAGAAACATTGACGAGTGTCTCAGCAGACCCTGTAGGAATGGGGCTACGTGCAGAGATGGTATCAACAGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015721:ENSGALT00000025350:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(6.5=5.1),PF0000822=EGF=PU(90.3=71.8)
A:
NA
C2:
PF0000822=EGF=PD(6.5=2.9),PF0000822=EGF=WD(100=44.1),PF0000822=EGF=PU(61.3=27.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGTACTTCTAGTCCATGTTTGA
R:
AGCTGTTGATACCATCTCTGCAC
Band lengths:
287-1030
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]