BtaINT0145420 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005493 | TBC1D14
Description
Bos taurus TBC1 domain family, member 14 (TBC1D14), mRNA. [Source:RefSeq mRNA;Acc:NM_001099176]
Coordinates
chr6:118289618-118290999:+
Coord C1 exon
chr6:118289618-118289746
Coord A exon
chr6:118289747-118290889
Coord C2 exon
chr6:118290890-118290999
Length
1143 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
ATTTCACATTTTCTCCCCAGATG
3' ss Score
10.59
Exon sequences
Seq C1 exon
GTTCAGGGCATGTCCTTCATAGCGGCCGTATTGATCTTGAACTTGGATACTGCAGATGCCTTCATTGCTTTTTCTAATCTTTTGAATAAACCCTGTCAAATGGCATTTTTCCGAGTGGACCATGGCCTT
Seq A exon
GTAAGTATCCCCATGTGTGTGTGGTGCCCTGGGTGCCGTGTCTGCACAGAGCAAGAGCAGCTGTGCCCTTCTGTTCGGTGGGAAGCTTCCATTTTCCCCTCCCCGGGGTTACTTGGAGCAAGTAGTGCTATACAGCGTGGAGGATTACCGGGGCACTGTGTTGACTCTGAAAAACGGGCGGTTAATAGCCATACATATGAATTTCGAAATGCATTCTTCCAGCAAGTGTTTCTGAGAATAAACCCTTGGCGTGAGAGGGGACGGGTGCCCCCACACGGACATCCTTGCTTTGTTTCAGAGCAGGCCCTTGGCCCGGTTCCCCCACGTGGAGGTCCACGGGGGAGGCCGGTGCCCTGCAGCTGTTTCGGCGCCGCACCCTGGTTGGTGCATCGTGCTTTCCCGCAGACCCCGTAGGAAGTTGAAGAACCCGTGCCGGCAAGACGCGGGCTGGGGTGGCTGGCTCCCTGTCCCTTCTGTGTTTTCTCCCGAGCTGTCTCCTGGGCTGCACGTGAGGAGGCCCACGGTCACCCTTGCCTGAGTGTCAGTATCAGACCCCCTCTGGGAAGGCCGGGGGTCGGCACGGAGGCTGTGTGTTTCCTCAGATCATCCTTAGATGGCGCATTCCTTTCTGGTTCTTGGAGGAGAATGAGCCGTCAGGGGTCAGCCTTTGCCATGGGCCAGGGCGCGAGTTGGAGGCCACACCTTGCAGGCGCGCGAGGCGCCCTCGTTAGGCAAGTTACGCACCTGCTCTGCAGAAGGAAGGGCGCCAACCCGGTGTTCCTGCCTGGAGAATCCCACAGATAGAGGGGCCTAGTGGGCCACAGTCCATGGGGTCACGAAGTCAGACACGAGTGAGTGACTAACACTCTCTCTAACACTCTGGGTTTCAGTTCTTTTATCTACAGGTTGAAGAAATGATGAGGTGTAGTCAGTTACAGTGACGTTACAGGGAGGTTAGAGATTATGCCTGTTTAGAAATCGCCTGTTCGCTGCCTGGTTTAGGGTTACCAGTAAATATACGTGAGCAGTTTACATATGAAGATGATTGTTGGAATCTAGGGGCATTAAGTATACTGACTTTCCCTGAAGATTGGAAACGTGCTGATAATGTATTTATTAGTGTATTTCACATTTTCTCCCCAG
Seq C2 exon
ATGTTGACGTACTTTGCTGCATTTGAGGTATTCTTTGAAGAAAATTTGCCGAAATTATTTGCTCATTTCAAGAAAAACAACTTAACTCCAGACATCTACCTAATTGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005493:ENSBTAT00000039389:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(18.4=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(15.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGGGCATGTCCTTCATAGC
R:
CAATCAATTAGGTAGATGTCTGGAGT
Band lengths:
238-1381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]