Special

BtaINT0146274 @ bosTau6

Intron Retention

Gene
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 [Source:HGNC Symbol;Acc:HGNC:11647]
Coordinates
chr29:46219060-46220438:+
Coord C1 exon
chr29:46219060-46219152
Coord A exon
chr29:46219153-46220280
Coord C2 exon
chr29:46220281-46220438
Length
1128 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
CACTACACCCACACCCCCAGATC
3' ss Score
5.02
Exon sequences
Seq C1 exon
GGTACAACGGCCCATCCCGGGGCCTTGGGGGAAGTGGGGGTGGGGAGAGGGCTTGCTGAGCCAGAGCCATCATGGAGGACTCCCTGGAGGAGG
Seq A exon
GTGAGCCCCAGCAAAGGCAGGGCACCTGTGGCACTGGGAATGGGCAGTGTGTTATGAGGAGGAGCCCCTGCCTGGCAGCGTGGGGGGGCAGGAGGGCCCCGCTCACCGAGCTGTCCTGCAGGGCCTGCTGCAGGGTGGGCAGGTCACGTGTGGCACACCAGGCCTCGGCGATGAGGCACTTGTGCGTGGAGCTCACGCTGCACTGGTTGAGGGCCAGGTACACGGCCTTCATCTTGCGGATCTGCACTTGCCAGGGCGGCAGCAGCCTCTGCACGCGGCCCAGCACCTGGCTCAGGAAGCGCTCCGTCTCCCCCAGGACCTGTGGCCGGAGCAGGTGATCAGGGCGGCAGTGGGCCGCGGGGGTGGCGGCCGGAGGTCCACCCTGGCTGCGGGCACCCACCTCCTGCAGCTCCTGGCTCTGCTGTTGCAGCTGCTGCAGGGCTGCATGCCGGGCTGCCTCCTCCTCCGCAAACGGGAAGACATGGCAGTGGAAGCTGGCAGGGAGCGGGGCGGTGAGCAGGTGCCTGGGGTCCAGGCCACGTGCGCGGGAGTGTGGAGGACGGCGCAGGCTTGGTGTGAGGTAGAGGGGACACCCAGGGCCCTGGGGGGGCTCACCAGTCAGTGATCTTGCGGATCTTCTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGAAGCGGGGGTGCAGGCACAGCTGGGGCCCGGGGCCAGCTCTCACTACACCCACACCCCCAG
Seq C2 exon
ATCTGGAGGACCTTCTTCGGGGGCCGCTACCTGCTGCTGCTCATGGGCCTGTTCTCCGTCTACACTGGCTTCATTTACAATGAGTGCTTCAGCCGTGCCACGGCCATCTTCCCCTCGGGCTGGAGCGTGGCGGCCATGGCCAACCAGTCCGGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000292:ENSBTAT00000000367:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.258 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0149614=V_ATPase_I=PU(3.2=41.9)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(12.8=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
LOW PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACAACGGCCCATCCC
R:
GGACTGGTTGGCCATGGC
Band lengths:
243-1371
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]