GgaINT0057524 @ galGal3
Intron Retention
Gene
ENSGALG00000003516 | TCIRG1
Description
NA
Coordinates
chr5:96382-96829:+
Coord C1 exon
chr5:96382-96521
Coord A exon
chr5:96522-96745
Coord C2 exon
chr5:96746-96829
Length
224 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CACGTTTTGTTCCCCCCCAGATC
3' ss Score
11.62
Exon sequences
Seq C1 exon
CCCCCTATGCCATCATCACGTTCCCTTTCATCTTTGCCATCATGTTTGGGGACGTGGGGCACGGGCTGCTCATGTTCCTCTTCGCCCTCTGGATGGTGCTGTTTGAGAACAGCCCCAGCCTGCAGCAGGGCAGCAACGAG
Seq A exon
GTGAGTGGGACACGGCGTGGGGCCATGGGTTGGAGGTAGAGGGCAAGTGCTGGGGGTTGGGGTTGGATGTAGAGGATGAGGTTGGAGGCATGAGATGGAGTTTGCTGTGGCACGGGGTCAGCTTGGGGCAAATTGAAGTTCTGGGCAGGGTGGTGTGGGATGGGAACTGCGTGGGCTGGGGGTGGTGGTGTGGGACGTGGGAGCCACGTTTTGTTCCCCCCCAG
Seq C2 exon
ATCTGGCAGATGTTCTTCAAGGGACGCTACCTCATCCTGCTCATGGGGGCCTTCTCCATCTACACCGGCTTCATCTACAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003516:ENSGALT00000005558:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(10.3=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(6.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTATGCCATCATCACGTT
R:
TCATTGTAGATGAAGCCGGTGT
Band lengths:
222-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]