RnoINT0148863 @ rn6
Intron Retention
Gene
ENSRNOG00000017220 | Tcirg1
Description
T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 [Source:RGD Symbol;Acc:735136]
Coordinates
chr1:219130550-219130942:-
Coord C1 exon
chr1:219130803-219130942
Coord A exon
chr1:219130708-219130802
Coord C2 exon
chr1:219130550-219130707
Length
95 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
GTCTCCCCCTGACCCCCCAGATC
3' ss Score
10.31
Exon sequences
Seq C1 exon
CTCCCTACACCATCATCACATTCCCCTTCCTCTTTGCTGTGATGTTTGGCGATGTGGGCCACGGACTGCTCATGTTTCTCTTCGCCCTGGCTATGGTCCTCACTGAGAACCAACCAGCTGTAAAGACCACGCAAAATGAG
Seq A exon
GTATGAACCATCCATACCTGACAAGGGATAGGGCACAAGAGCTGAGCAGCCGTGAGCTGAGCTAAACAGCGCACTGTCTCCCCCTGACCCCCCAG
Seq C2 exon
ATCTGGCAGACCTTCTTTGGGGGTCGCTACCTACTCCTGCTCATGGGTCTGTTCTCCATCTACACGGGCTTCATCTACAACGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGCTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017220:ENSRNOT00000023425:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(11.1=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGCTATGGTCCTCACTGA
R:
GGGAAAATAGTGGTGGCTCGG
Band lengths:
168-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]