BtaINT0146275 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000292 | TCIRG1
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 [Source:HGNC Symbol;Acc:HGNC:11647]
Coordinates
chr29:46220281-46220606:+
Coord C1 exon
chr29:46220281-46220438
Coord A exon
chr29:46220439-46220515
Coord C2 exon
chr29:46220516-46220606
Length
77 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CCTCCCCACTCTTGTCACAGCGA
3' ss Score
8.83
Exon sequences
Seq C1 exon
ATCTGGAGGACCTTCTTCGGGGGCCGCTACCTGCTGCTGCTCATGGGCCTGTTCTCCGTCTACACTGGCTTCATTTACAATGAGTGCTTCAGCCGTGCCACGGCCATCTTCCCCTCGGGCTGGAGCGTGGCGGCCATGGCCAACCAGTCCGGCTGGAG
Seq A exon
GTGAGGCCCGGCTGCTCCCCTACTCCAGCCCCGAGGCCCCTGGGCCCCTGACCGCCCCCTCCCCACTCTTGTCACAG
Seq C2 exon
CGATGCCTTCCTGGCCCAGCACCAGCTGCTTGCCCTGGACCCCAACGTCACTGGCGTCTTCCTGGGACCCTACCCCTTTGGCATTGACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000292:ENSBTAT00000000367:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(12.8=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(7.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATGAGTGCTTCAGCCGTG
R:
CAATGCCAAAGGGGTAGGGTC
Band lengths:
168-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]