Special

BtaINT0148120 @ bosTau6

Intron Retention

Gene
Description
T-cell lymphoma invasion and metastasis 2 [Source:HGNC Symbol;Acc:HGNC:11806]
Coordinates
chr9:93229571-93233644:+
Coord C1 exon
chr9:93229571-93229679
Coord A exon
chr9:93229680-93233464
Coord C2 exon
chr9:93233465-93233644
Length
3785 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TTTAATCCATCTGCTTGCAGCTA
3' ss Score
8.75
Exon sequences
Seq C1 exon
AAACTGCTGTTTTCCCTCGGAGGCTCTTTCCTTTATTATGCGGACCACTTTAAACTGTATAGCGGATTCTGTGCTAATCATATTAAAGTACAGAAGGTTCTAGAGCGAG
Seq A exon
GTAAGTGGCTCACGTTTTATAGCTATACTTTTGAAATTGTTAGAGTAAATTTGTATTCATTAAGGATAAGTGTGATTTTAATGGGGTGTGCTCCATTGTTGGCCTTGAAATGAACAAACATTAGAGGGGGAGGTTCCAAACTTATCTCAGTTTTCTGGTAACAGTGAATGTGTGTGCCTGAGAGCCGAGATGTTGCTTGGCTATCACTTTGCTGTTAAATTACATCTGCATTCTTTTTTCACCAACTCTTTTTTTCTTGCTCTAAAAACTTTTAACCAACCATATAAGCCCCTGGAGGGAGTAGAAAGAGATGTATGGTGTTTTCTTTCTTGTTAACCTTTTTCTTAAGCCTGAGGATCCACTGCAAAAAACCACCACGAGATAACTACTACTAAACTCACAGGACGTGTGTTAACTAAAATGAAAACCTCTTAAGTGAAGCTGGTTTTTATCACAGCCCCTAGCTTGTCACTGAAGTACCTTTTATCTCTCTGCATTGTTATCCTCTTATTTTATTTGACTGACTTTAACCGAAGACTTTTACATTTTTGAAGTCCAAGTAGACAGCGGTAGCAAACCCGTCTCGCTCTTCCCCTTCATGTCAACAGCAAACAGTACTCTTGGAGCTGGAGAGATGCCTGAATTTTGGCCCCTGACTTGCAGTGGGTCAGCTTGGGCCAGACGGTCAGTGCACTGATCCTCCTGGGTTTTCAGTGGCCAGCCAGCCCGTCATCTCAGCCTGGGAAGTCTGTCCAGAGATTTGATGGCCGCAGTGACCTTCTTCATGTGTAGGATATTGGAGGGAGTATCTGTGTCACAGTCACCATCATCAAGTCAACAACCCTATGTCCAAGCTATTCCTGTAATACCTATTGATGAAAATAATAAACAGACAATAACAGGAATAGGAGAAAGTTTTATTTGAGCCAAACTGAGTAGGGTCTTAAACAGCCAGACACGACCGAGCACAAGGAGCCTAGCCCAGAAGACAGCTTCTGTGATTACTCTCTCAGGGTGTGCTCCAAAGCAGGGCTGCCAGCAGTTTTCTGTCTTGTCAGAACAAAGAATATCAAATAAGTCAAGAATACATTGCTTCAAGGTTCCAAGAAAATCAGATTGGCACGTACAGAGCCAGTCAGTATGGCCTTGGCACCTGGGAAGGGAGTTTTATCATGGAAGGAGGACCCACATTGGTGTCCCAGGTTGGGAGGCATTTAATCTTTATTTTTAACACAGATCATCTTTTCTTCTGGTCAGTGCACCCTTTTCTTTAATAATTAAAGAAGATGCACAATGTCTGTTTGATAGTTCACAAACAGGCTGTTTTCGTTGGTATAAAATTCAAGTTAACTCAGGTATAAGCCAGGATGACTTCCCCACACATTTCTTTTATTATTCCCTGAACCAGAAATGCTTAAATGTTATTACCAAAAGCTTCTTTCAGTCATCACATAACTCGTTAGGCATGGGATTAGAATTCTCAAATTTGTCTCTCTCAGAAGATAGGTTTCTATCTCGTTCTTCGGAATTCTCATTTCTGGTGGCAGAGATGAGAGGACGCCTTTAAGCTCAAGGTCATGAGCAGCAGTAATTCAGTCTGCATGGAGACCGTCAAACAGAAACAGGTCCCCAGGGGTTGCTCCTGTTCTGCGCGGGTCCTATAGAGGAAGGCATCTTATGAGAATATGTCATCCTAGTTAAGGTCATCTGAACTGTCTCCAGGAAAGGTCACCAGGCTACCTGCATTCTCTCAAGTGTACTTGCAGATCCTTTAGGATCTGAACCCACTGACTCTTGAACTCATAATATAAAATTCCCGGGAGAAAGAAATGATTCCCGCGAGAGGTGAATGCTGCCTTTGGAGTTAAGGTTGCCCTCGTGTGCTTACTCTTGTGAAGATCTGCCACCTGTCTGGAAGCCAGTGAATCAGGGCTGTTGTCCGTGACAGTGGCAAGCATTTGAGAGGCTTTTGTATTGGAACGTTTTTAGTTGTGTCAACAGGATAGGAGCAGCCAAGCTGCATTTCAAGTCCCTTTTCTCTCTCATCAAATGCTTCCTAATGGCATTGCCATGAAGAATCGAGTGTGTGCTTCCATATGTCTATTTCAGAACCGGGGAGTGGTCTCTCTGTGGTGTCACGAGGGTGTGGAGGGTTCCTTCAGATACTGCGAGTGTTCAGTCACGTCCACGGATGCAGTTCTGCCCTTCAGTTTAAAACCCAGAACTTCATAGCATCTTAGAATAGGCTCAAGTTGAAAAATGGAGTCTTAGAGTGCTACCCTCTAGATGAAGTCTTAGAGGTTAACAAGACACAGCCCAAATCTATCTTGTCTAGTTCTTTAAACCAGAGACAACTACTTTCCTCTGAGGAATGCCTTCTTGGCAGTATAATAAACTAAAAGCATACAGATGGTTTACTCAGTTTCTTGTCGCAGAGATGAACGGTCATCTCACCATCCACGCTGTCTTGTAGCCATTTTCAAAATGGTACTGCACCTCCTACAAGTTGTATTTTGCCTTTTGTATAAAACCCCAAATAAAGGTTTGTCTTCCTTCAAATTGGCTGAATTCCAGCGGCTGGTGGACCAGTGCCAGCATGTGGAATCCAAAGCAACAGCTGAGGTGTCCACAAGCACTCTGAAACATTAAATGCACTTGGGCTCACGAGTGTACCTTCATGACACTGCACAGAGACGGGGTTTTCACTGCCCAGGGGGGTCTGAATCTGGTGGAAGACATAGACTGCTCGGAGCTGTGGAGATGGAAGCTGCAGTGCTTGTCAACTTATTTTTAAAAGAAAAGAAAAAAAAAAAGATCTCGCTTTAAAAATAGCCCTTAAGTATACAGAATAAGTAGCAATCTGTCCTAGGTCAGTGGAAAAAAAAAATACTGGTTTGTTTTGCTCTATGAATTTTGTGAATGGTATGGTGTAGGTTCTAAAATGTCTTGTAGGTCTTCATAGAACCATTCAACTTCAGCTTCTTCAGCGTTACTGGTTGGGGCATAGACTTGGATTACTGTGATATTGAATGGTTTGCTTGGAAATGAACAGAGATCATTCTGTTGTTTTTGATCTCCATTCTGAAGATCAGCCCTGGGATTTCTTTGGAAGGAATGATGCTAAAGCTGAAACTCCAGTACTTTGGCCACCTCATTCGAAGAGTTGACTCATTGGAAAAGACTCTGACGCTGGGAGGGATTGGGGGCAGGAGGAGAAGGGGACGACAGAGGATGAGATGGCTGGATGGCATGACTGACTCGATGGACGTGAGTCTGAGTGAACTCTGGGAGTTGGTGATGGACAGGGAGGCCTGGCGTGCTGCGATTCATGGGGTCGCAAAGAGTCAGACACGACTGAGCGACTGAACTGAACTGAACTGATGGTGTAGGTTTGGATAGTACTGTTTTGTGGCTTTATGAATTATTTGGTATAGACGCTGAAAAAGTGAGTTTCAATCTGTCTTGTGGGTCTGCAGGTGAACGTGCCTTTAAAGTCAGACTCCATTGCATTTTGACTCCATGTTCTTCTTTGGTCTGTGGCTGGGGCCCTTCTGGCAGCCCAGTAAGCTCCCTTTGTTTGTGGGATTCGTCACCAAGCGATGATGCTGAGTCCTTGTTGACAGTGGGTGCATGACCCACTGGTGCAGGTGGTTTTTTCCTGGAAGGGTGTCATTAGGAGGGCTGTAGCAGTGGATCATCTGTAATTCCATTAAAACCTAAAGGAAGTGGAATTTACATCATCCTGCTGTGCTCTTCTAAGGGTCTTTTAATCCATCTGCTTGCAG
Seq C2 exon
CTAAAACTGATAAAGCCTTTAAGGCTTTTCTGGATGCCCGGAACCCCACCAAGCAGCACTCCTCCACGCTGGAGTCTTACCTCATCAAGCCAGTTCAGAGGGTGCTCAAGTACCCGCTGCTGCTCAAGGAGCTGGTGTCCCTGACGGACCACGAGAGCGAGGAGCACTATCATCTGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010047:ENSBTAT00000013256:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0062115=RhoGEF=FE(18.9=100)
A:
NA
C2:
PF0062115=RhoGEF=FE(31.6=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]