GgaINT0085345 @ galGal3
Intron Retention
Gene
ENSGALG00000013645 | TIAM2
Description
NA
Coordinates
chr3:52482614-52483520:+
Coord C1 exon
chr3:52482614-52482722
Coord A exon
chr3:52482723-52483340
Coord C2 exon
chr3:52483341-52483520
Length
618 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
ACCCATTCATTTCTATTTAGCCA
3' ss Score
5.12
Exon sequences
Seq C1 exon
AAATTGCTGTTTTCCCTGGGAGGATCGTTTCTGTATTATGCTGACCACTTCAAACTGTACAGTGGCTTTTGTGCCAACCACATCAAAGTTCAGAAAGTTCTTGAGAGAG
Seq A exon
GTAATTCATTGTCTTCATTACTACAATTCATTTGCATGACTTTAAACTTCAGTGAAACACTGTAACAAACTCTGTTGACCTGCAGCAAATATGGGTACAAAGGAAGGACTAATAGGATATCTTTCAATAGAAAGAGCTGAGATCTGCAGTTCTGCTACAGTACGGTATAGAACTGAAGGGATGAGATTTCTTTTGTGACAACTAAGCGGTAGCCTGAATAGCAACAGAAACATCTGCCACAGGTTTGTGCTGTCTGCAGATTTAGTTCATACTCCAAAAAGCAGCAGCTATATTTGGTTTGCATATGCTTGCATGTTAAATGATGGATGTCGATCAAAGCTGCCATGAATGGAAGAGTAAGTGAGGAATTACTTCCTCTATCACTTCTTTAATTTGATGCAGAAGAGGCCTGCAGTGCAGAGGAATCATGTCACCTTTAGATGATTGCTCTCTTAGCCCTTCTGTACATTATTTAATGCAGGAAACGACAATGACATGAATAGTGTAAAACATCTATTGAAAAAGGTGAGGTATTTGATGCTGGTTACAAGTTGCAATTCTGTGCTTTCACACTATGACTTCCACGTTCAACCGATAAACCCATTCATTTCTATTTAG
Seq C2 exon
CCAAAACAGACAGTGCATTTAAGGCCTTCTTGGATGCTCGCAATCCTACAAAGCAACACTCCTCTACGCTGGAGTCGTATCTCATAAAGCCTGTTCAGAGAGTGCTGAAATATCCTCTGCTTTTGAAAGAGCTGGTGTCCCTGACAGACAACGAGAGTGAGGAGCACTACCATTTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013645:ENSGALT00000022192:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(18.9=100)
A:
NA
C2:
PF0062115=RhoGEF=FE(31.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCTGTTTTCCCTGGGAGG
R:
TGTCAAATGGTAGTGCTCCTCAC
Band lengths:
286-904
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]