BtaINT0148515 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006918 | TLK1
Description
tousled-like kinase 1 [Source:HGNC Symbol;Acc:HGNC:11841]
Coordinates
chr2:25430151-25433553:+
Coord C1 exon
chr2:25430151-25430226
Coord A exon
chr2:25430227-25433506
Coord C2 exon
chr2:25433507-25433553
Length
3280 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TTTTTACTTTTATATTTTAGGAA
3' ss Score
11.57
Exon sequences
Seq C1 exon
ACACCAGAGAAGAAACAATCAGAATCATCCAGAGGAAGAAAAAGAAAAGCAGAAAACCAGAATGAAAGTAGTCAGG
Seq A exon
GTAAGTGAAGCAAAATCCTCCTTCATACCCAAAGAGGTATTTGCAATTAATTATTCTGGTTTTTAATCAATTAATAATTTGTTTTAAAGTTTTCTGTTCTTGTGATTTCTATAGATACCGTGTAATATCTGCATTAATAATAGCTTACATATACTTTGTGTAAAAAATATTATGAAGTTGGAGTCTTTTTGTACCACAGGTAGTTTGCTTATGGTTACTCTTTTTAACATTTCCTTTATTTTTTTGAGAATTAGAAAGTGTCATGTCCAAACCTGATATGCATTACCTTTATCACCTTTCTCTGTTCTCTCTTTATATGAAATATGGTGTTGGAATGACTTCTTGTTTTTGGATAAGAATTTTATATCTTGCTTTGAAACAAATACCTAAATTTACTCATCCTTTTTGTTGAAAAAAAGATTATATAAAAATGATTGAGGAGCTTCATTAAAACATCATCTTTTTCTTTCCATACCTTTTCTTCATCCGTTTTTGCTTTCTTTCCATATCCTTTCTTCATCTTTTTTTCTACATTTTATATTATAAACTAGTAAGGAAATTACTTTCATTAGACTACAAAACTTCTTATAATGGATAAGATAGTATTATCATTTAATTTGGTTTTTCAAGATTAAACACAATAAATTGGACTCTTGAATCATATGTAATGTTGATTTTATGCATATATTATGTGTTTTGGAGCCATTTTTAGCTACAAAGTCTAGAGCTATGAACCCATGGCTTACTAGTATTTACATGTGGCACTGGGGTCAAGAAATAGATTTGCAGCAGCTGTCTTTGTGGAAAGGGTAAGTTGGGTCACTCTAGCGCCTTTCTCTAAGTTTGTGCTATTTTGTATTTCAGCCTGGCCTGAGGTCCTTTTTGATCTTAGTGTAGTTTCCTCATCTGTGTTTAGTGAACTTGGATTTATTTAGTTATATTAGTTATGATAGTTTTAACATTAAATTTTAAAGCTCACTTAAAAGCAGGTTTCAATATAGTGTGGGACTTCTGGATTGGTTGAGCCAACTTATGTCTTTAGGAAGCCACATCATTTTCTCTGTGATCTGCCATCTACAGAATTGTCTGCTTTTTTTCTTTTATGATTTTAGGACTGTGGCCATTTTAAATTGTATCTCCTCGTTTCATCCTCCACACTTGTATTTGCTTTAGAGAGAGGCTGGTTTTCTATGTGCTTTTCTTTTTTTTACCTCTCTTTGATGTAGGTTATTTAAGTTCATAGCAAACCTCTCCTGTCATCTTCTTGGTCAGAATTTGGTTCTGTGTCCATTCCAAAACCAATTATGTCCATGAGAGGTATTATTGCCCTTAAAATCAGGCCTGTCTCTGAAATTGAAAATGTGGTAACATTCCCCTTAGAAATATAGATCTTGTGCAGAAAGCGTGATACCTGAGAAAAACTGAATTTCTGATTAGAAGGAGGAGAGATAGGGAACTAGGAATGGAGGCCAAATAGGAAACAGCCTGGGAAGAAAAGCTATGACCAACCTAGACAGCATATTAAAAAGCAGAGGCAATACTTTACAGACAAAGGTCCATCTCGTCAAAGCTATGGATGTGAGAGCTGGACCATAAAGAAAGCTGAGTGCCAAAGACTTGATGCTCTTGAACTGTGGTATTGGAGAAGTACTCTTGAGAGTCCCTTGGACAGCAAAGAGATCCAACCAGTCCATCGTAAAGGAAGTCATTCCTGAATATTCATTGGAAGGATTGATGCTGAAGCTGAAACTCCAATACTTAGGCCACCTGATGTGAAGAACTGACTCATTAGAAAAGACTTTGATGCCGGGAAAGATTGAAAGTAGGAGGAGAAGGGGACGACCAGATGAGATGGTTGGATGGCATCACCGACTCAATGGACATGAGTTTGAGCAAGCTGAGGGAGTTGGTGATGGACAGCTAAGCTTGGCGTGCTGCAGTCCATGGGGTTGCAAAGAGTGGATACGACTGAGCAACTGAACTGAACTGAAATTATATGGTCTATGCAGGGGAGAGAACGTTAACAGAATAAAATTTGGATTCAATCAGGGAAAAAGAACTGGGGAAATAGTTTCTGGTAGGCAACCAAAAAATGTCTCTGTCTTCATTAAAAGATGGCACCACTTCAGAATCTGCAAGAAAGTTGTTATAGGCAGAAGGAAAATTCCTTTGGTATTTAAAACCTTACAGTCCTCTCTGACCTCTGAATAAACCTATACAAAACTATTGAAAATTTCTAGGTTGTATTACTTCTTAGTTTTTTTTTTTTTTTTTTTAATGCCCCCTACCTTGTTCCAGGAAGGAATCTGAGGTTGTTGAACCTTTAAATGTATTGTTTGTTCATCTTGGTAATGCCTGGCAAATAGTAACCACTCAAGAAATGTTTGTTGAATAAAATAAGTGAATGGATGATGTGTCAGTATTGAATTGATAAATGTTTGTATTATCCAATGCTTTTGACTCCATGCTATCATTAGTTTTTCTTTTGTAACTTGAAGAAATGATGTATTCAGTGTAATTCTAATGAAGGATGGATAACTCCCATCCAAAATGCTATATTTCTTAGCAGCTTCTCAGTTTAGTATTTATAAAATTGATGAAAAAATTCATCTTATTTGCTTTTTGTTTTTTTAAAAGTCCATTTTGGAGCAAAACTTTTAATGATAATTTTGACCACTTTATCAAAGTGGCCATGTAAGCACAATATTTAAAATCTAGTTTATTTTTGAAAAAAATCCTATTAATTTGAAAATACCTTTTAGAAAATCAAGTATTTTACAAAATAGTGTTCATATTAAAGCATGTTATTGTCAGTTTGTTATGGTTTGTGTTGACCGAGCTTTTTTATTATTTATAGATATAAATTGGTTTGTCAGTTATACAGCTGCCACTAGTCTTTTTTAATTGATATATTTTTCATTGATACACTTTTCTCAAGTTATTAACCATGAAGCAATATGAATAATGTTGTTTTAAAAGCAGGCAGTCTTTTAATATGATTTATTTTTCTGATTTTCCCATAGTTGAGACTTTTAAAATTGACATGTATCTATTGGAATATCATTTGATTTTTGGAATTGTGAAGTTGGCATCTGACCCTCTGAGGAATCTTAGTATTCTTTTAATGCCCATCACCACCCAACTAGAATATCATATTCTTAACATTATTTTTGTGTGTATTAGGGGAATTAAGTTTGGCACATTCTCTTTCTCATATAATATGTGATAGATAGTCACGACTGACTTTAAATCTGTAAAATTTTTTACTTTTATATTTTAG
Seq C2 exon
GAAAAAGTATTGGGGGACGTGGCCACAAAATTAGCGACTATTTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006918:ENSBTAT00000009090:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]