DreINT0163683 @ danRer10
Intron Retention
Gene
ENSDARG00000042467 | tlk1a
Description
tousled-like kinase 1a [Source:ZFIN;Acc:ZDB-GENE-071008-2]
Coordinates
chr9:3611892-3613169:+
Coord C1 exon
chr9:3611892-3611967
Coord A exon
chr9:3611968-3613125
Coord C2 exon
chr9:3613126-3613169
Length
1158 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAC
5' ss Score
4.45
3' ss Seq
GTCTTTTTTCCTTCTCATAGGGA
3' ss Score
10.86
Exon sequences
Seq C1 exon
ACTCCCGAAAAGAAGCACTCGGAATCGTCACGGGGCAGGAAGAGGAAAGCTGACATCCAATCAGAGAGCAGTCAGG
Seq A exon
GTAAACGCTTGCTCACTCTTTCTCTCTCTCTCCCTCCTAGTATGTTCTTCACATAAAACTTGAAATCTGTTTGTCTTTCTCTATGATTTGGTTGGCTACAGAACAAAGTACTGTTGTTAAATGGCTTATTCAGTTAACCTAATTAACCTTGTTAAGCCTTTAAATTAAGCTTATAGCTTTTATCTATCTATCTGTCTGTCTTTCTATCTCTCGTGTTCTTTGTCTATCTATCTGTCTGTCTGTCTGTCTATCTATCTATCTATCTGTGTCTGTCTGTCTGCCTGCCTGCCTGCCTGTCTATCTGTCCATCTTTCTATCATTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCATGTTCTATCTATCTATCTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCATGTTCTATCTATCTATCTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCATGTTTTATCTATCCTATCTATCTGTCTGTCTGTCTGTCTGTCGTGTCATGTCTGTCTCTTTATCTGTCTGTCGTGTTATGTCTATCTCTATCTTTCTGTCTGGCTGTCTGTCGTGTTTATCTGTCTGTCTGTCTGTCTATCTGTCGTGTTATGTGTGTGTCTGTCTGTCTATCTTGTTATCTATCTGTCTGTCTGTCATCTATCCATCTATCCATCCATCTATCCATCCATCATTTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTCTGTCATGTGTGTCTGTCTGTCATCCATCCATCCATCCATCTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCGTGTTATATATTATTTTATGTATTATATATCTATAGTGTTATGTGTCTGTCTGTCTGTCTGTATCTAGCTAGGTTTATGAATCTCTCTCTTTCTGTCTTCTAGTATGTTCTCTACATAATTCTTAATGTTAATCATATGTCTTTTTTCCTTCTCATAG
Seq C2 exon
GGAAGTCTGTCATCCGGGGACCCAAAATTAGCGATTATTTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042467:ENSDART00000123074:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.933
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]