BtaINT0150382 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008342 | TMPRSS13
Description
transmembrane protease, serine 13 [Source:HGNC Symbol;Acc:HGNC:29808]
Coordinates
chr15:29016272-29019303:-
Coord C1 exon
chr15:29019199-29019303
Coord A exon
chr15:29016395-29019198
Coord C2 exon
chr15:29016272-29016394
Length
2804 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGT
5' ss Score
5.56
3' ss Seq
TTTTTTTTTTTTTTTTCCAGTTT
3' ss Score
10.81
Exon sequences
Seq C1 exon
GTATCACCTTGCCCAAGTTCACCTGGCAGGAGGGCCAGAAGCGGCTGCTGCTCATCGGATGTGTCCTCCTTCTCATCGCCCTCGTGGTGTCGCTCATCATCCTAT
Seq A exon
GTGAGTTTAACAGAGGGAGCAAGCCTGGCACCTGGTCATTGCAGGGTAGAGTGGGGTTGGGGGATGTGGGCACCCAGCAGGGAGACAAGAGTGGGGAACACACACCGGCTGCCGTGTCCACAGAGGGATGCTCCTACAAGTGGCCTTGAACCCTGGCACCTCCAGGCCCCTTGGAGGTGGGTGGGTTGAGAGGGTGGAAAGTCAGAGGAACGAGGAGTGGGTCCCTTCTGTAGTAGTTCACCAGTCTGAGCTCAGTTTCTGTGTCTTCAAACGGGATTAAATCCATTCATTCATTCAAGTTAACATGTGCTTAGTAAAATATCCTGAAGATTTCTCTGGGTTATGAGGAATAAATGAGCTAATGGCACAGTGCCTGACACAAAATCCCACTCTAAAAATGTGAATTATTTAAAAAACAAGCATTAAAAACATTGATGAGGTAAAGGCCCCTTGGGCATTTTTGGTCAATGAGATCAAGTGTTCAGGGGTCCAATCTCCCTGAAATCCACACCCTCTTCTTGAAAAGACACTCAGGACCTGTGCCAGGACTCCCTGCTGGGATGTCTGCTCTGAGCTCAGCACAGTGGCAAACCTTAGCGGGAAGCAAAGGGGAGTACCCACTGTACCCCCCAGTCCTCGGGGCGAGTACAGTCCCCTGGGAGACAGAGATGGAAATGATTAAGGCCAAGTGGATTTGAGTATTACCATCAGGAAGAGAGTACAGCTGTGTGGGTACGGAGGCAGGGGACAGCTCCTGAAGATGAGGACCCAGAAGATGGCAGGGAGGGGAGGATCTCCTGACAGGGCATCTAAGCGGGGTGAGCGGCTGCAGGAAGTGTGTTGGGGGGCCAATGGGCAAGTTGGCATGGGGAAGGACCCGATTCGCCAGGGTGAATACTCATCTGGGGACCTGCAGGCTGTCCTTGGGTTGGGCACGGCTGGGCCACGTTGTAGAGAGCTTGAAGTGCCAGGCGGAGGGGTGAGGATTCTGTTACAGAGGCTGCTCAGGGCGGTGAAGGGCGGGCTGGGCGACTGCAGGGAAACACCCAGCTGGCAGGGCTGTTTGAGGAAGAGAATCACATGAAAGAAGTAGCTGGTTACAAGTACAGCTTTAGGACCAGATAGACCTGCTGCAGCATCTCGGCTCAGCCACTTAAGTTAATGAACTTCCTGAGCCTCAGTTTCCCCACCTGCCTGACAATGCCCATGAAGGTGTCAGCACAGAGCCTGCCTCGTGGCCTCCATGTGAACCTCCCACCAGGATGCTCGACCCTATTCCCTCCCTTCCCCACACAGGGCACACGCTCCAGGGGAGGCCCCTGGCAGTGCACAGAGAGCAGCAGGAAATAATCCTGGGGGAGGTGAGAGGGCAAGCTGGGCAGGGGGGCTCTCAACATGATTTCACAGGATTTCCTGAAGTCCCCTGACCTCTGGACTTCCCGGGGAGGTGGTCACTGAGTAGCTCAGCAATGCGGTCAGGACTAGAGCCCCCGCCTCCTGAGAGCTCTCTGCTACACATCAAGGCGATCCCAGGAGCCTCGGTGCCCGGGGTGGGCGTGGGTAGAAAGACCAGGGCACAGGAGGAGGAGAAGTCCAGCAGGTTAAGGGGACTGGTGTCTGAACCAGGGAGGAGCAGTCACACAGGGTGACCTCCAGCTGGTGAGACAGCATAGTGGGGCCAGTGACAGAGGCGGGGGTCAGGGCTGAGAAACAGGTTGCAGACAAGAGGCAGGGTAAGGGGTCAGACCCTGGGCTTCCTCAGGCGTCCAAGGTGAGGAGTTTCCAGGCAGGAGGCATGACAACTCCCCATATGGAAAGAGCTCTTAGGAAGTCGCGGAGCTGATGCTCACATATGGTTTGTAAAGCTGTCGGCTTTTCAACCCAACTTGTGCATTCGGGAATCAGCCACCTAGAGTTGCTCGCTGAGTGGGAAGACACTTTTTTATTTATTTTTGGCTGCGCTGGGTCTTTGTTTCCGTGTGTGGGCTTTCTCTAGTTGAGACAAGCGGCGGGCTGCTCTCTGGCTGCGGCGCACAGGCATCTCATTGCCGTGGCTTCTCTTGGTCTGGAGCACGGGCTCTAGGGTGTGCAGGCTCAGTAGTTGTGGCTCACAGGCTTAGTTACCCTGAGGCAGGTGGGATCTTCCTGGACCAGGGATCGAACCTGTGTCCCTGCATTGGCAGGTGGATTCCCAACTGCTGGACCACCAGGGAAGTCCCTGGGAAGACAGTTAAAGGCCTTGAGACAAGCAGTGGGGCAAGAACTGAGCCTAGGGGATAGCTCTTGCTTATAGAAGAGGGAGGTGGAAGAAAATCTAGGAGCTTTCGAAGCTGGAAGGACAACCTCTGAGAAGATGGGGCAGGCAGTGGCTGCAGATGTGTGTGCTACGACCTGCAGCGCATAGAGATGCTGGGGATGCTGGACTGGGTCTGAGAAGGGGCCTCCGGGATACTGAAAAGGAGGATTTCTCTGAACAACTCTCTGGCCAGCATGTAGGGCAGGAGAGCTTCCGGAGTACTACCCATCTCCATACCTCCCTCCCTTACTCTCTCTCTTTCTCTCTGAGTGGCTGCTTTTGAGTTTGCCTGGTGCTGTCCTGCTTGCAGGAACTTTCTGGAACATTCCAGAGCATTCCTGAGCAGCCTTTCTCTCCATACAGATGGGGGACGAGAACCCCAGAGCCCAAGAGGGATTGCAGGTCGGTGTCTGAGAACCCCCAGGGCCTTGGGCTGCATTGTGTCATGTCTCTATGGGGCTAGCAATGACCCAGCTTCTGCTTTATGTTTTTTTTTTTTTTTTTCCAG
Seq C2 exon
TTTACTTTTGGCGGGGCCACACAGGGGTCAATTACAAAGAGCCAAGAGAGAGCTGTCCTAGTCACGCTGTGCGCTGTGATGGAGTTGAGGACTGTAAGCTGAAGAGTGATGAGCTGGGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008342:ENSBTAT00000010989:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=69.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development