HsaINT0169668 @ hg19
Intron Retention
Gene
ENSG00000137747 | TMPRSS13
Description
transmembrane protease, serine 13 [Source:HGNC Symbol;Acc:29808]
Coordinates
chr11:117785107-117787989:-
Coord C1 exon
chr11:117787885-117787989
Coord A exon
chr11:117785230-117787884
Coord C2 exon
chr11:117785107-117785229
Length
2655 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
GTCTGCTTCTTTTTCTCTAGTCC
3' ss Score
9.21
Exon sequences
Seq C1 exon
GTACGAGCCTGCCCAAGTTCACCTGGCGGGAGGGCCAGAAGCAGCTACCGCTCATCGGGTGCGTGCTCCTCCTCATTGCCCTGGTGGTTTCGCTCATCATCCTCT
Seq A exon
GTGAGTTGAATGGAGGGTGCAGGGGTGGGTTCTGGGCACTGCTGGGCAGAGTGGGACCCAGGGATGGGGGCAGGCAGGGGAGACAGGTGTGGGGAGCACCCACTCACCCGGCTACTGTGTCCAGAGAGGGACACTCCTGCAAATGGCCTTGGACTGTGCTGCCCCCGGGGCCCCTGTGGGGTATCCAGGTTAACAGTGTGGAAGTCAGAGGAACCTGAGCTTGGCTCTCATCTGTGCCACTTACTATGCAGCTTACTTGGGCAAGTTAGTTAACCACCCTGAGCTCAGTTTCTGCATCTTCAGATGGGACAAAATTCATTCACCCATTTCATTACTATGTGTCCCGTAAGTTCTCATTCCAACTTCATTAGATTATGAGGAATAAATAAGACAACAGCACAATTCCTGGAACAAAATCTACAAATACTAGCTATTAAAAAAACACACATGAAAACACTGATTGGAAAAAGTCTGTCAAGGATATTCAGTCAATGGGATGACGTGTTCAGCATTCAGGGGTTCAGGCCCATTCTCTTCAGCAAAGATACCCAGGCATGCCCCAGGGCTCTCTGCTCAGAGGTCCACTATGAGCCCAGCACAGTGGGAAACTTTAGGCAGCGCAAATGTGCATGTACATTATTCTGTCCTGTCCTCAGAGAGATTACAGTCTCCTGGGGGAATAGCTGGAAATTTTGAAGGGCAAATGCATTTGAGTGTGACTATGAGGAGGGGATGACAGCTGTGTGGGTTGGATGCAGGGGATAGCTTCTTACAGCTGTGGGGCCAGATGAAGACCTGGAAGGTGGGACAGCAATTATGCCCAGCAGGGCATCTGAGCGAATGAGCAGCCACAGAAAATGTGGGAAACCAGGTGGCAAGGACAGCATGGGGGAGAGGAAGGGACCCGCCTAACCAAAGTGGAGAAGGAACTATCAGGGACCTGGGGCCGTCTGTTTGGTTCAGCAAGGCTGGGCCATGCTGTAGAGAGCTTTAAACCCCAGGCCAAAGAGTAAGGATTCTGTTAAAGAGGCAGCACCAGTGGTGAAGGGTGGAGTGGACCAGCGTGTGGAAACGTCTGCTGGCAGGGCTGCTGAAGGGGATTCTGAGGGAGGGGCAGTGTGCTGGCAGAGCAGGCTTTAGTGCCACACAGACCCTGGCTCTGCCACCGACAGGCTGTGTGAATTCGACAAGTCCATTAACATTCTGAGCCTCAGTTTCCCCACCAGTCTGACTGGGTGGGGTGGTCTTTGTCATAATGCACATAAAGGCCTCGGCATGGTGCCTGCTGTGACTTGCTGCCCTGCCCTCCCTCCCTTTCCCACTACAGGGCACCCTGCTCCATGAAAGCCACAGGACTAACCCATGGAGGGGCGAGATGGCACCCACGGGTGGGCTCACAGAATAGAACTAAAGCTCTCAGCGTGGTTTCACAGCATTTCCTGAAGTTCCCAAAAGCTCTGCCAGGGAGGCCTCTAGACCTCCAGGGCTAAGGAGGTGGCTTGACTTGTGCAGGTCACCAAGCAGCTACCTGGTGGGGTCAGGACTAGAGCCCAGGCCTCCTGACTCCCAACCCGGCCCAGTACCCTCTCCACTACACATCCACGTGGGGCTCCATGAGCACTCCAGGGGAGACTGCCCAGGGTTCCCCGGGGGTTGAGTGCCCAGGATATGGGAGGAAGACCAGGGCACAGAGAGGAGGGGCCAGCCCAAGAGATTAGGAGGGATTTGTGTCTGGACCTGGAAGGAGCAGTCACACCCGGGCGGCCTTTACCCTGGGTGATGGAGAGCACAGTGGGCCCCGGAGGAGAAGCAAGGGGTGGGGCTGAGGAGCTGGTGGAGGAGGAGCGGCAGGGTGAGAAGTTAGAACCCGGGTCTGTGAGGCAGCCAAGGGGAGGTGCCTCCAGGCAGGAGGGCCCACAGCCCCTGGTTTGGAAAGAGATTGCTGTTAGAGAGGGAGGAAGTCGTGAAGCAGATTTGCACATATGGCTTGTAAAGCTGTTTTCTTTTAGCCCCAACTTGTATATGTGGGAATCAGCCACCTAGAATTGCTGGTTGATTGAAAAGACATTTAAAGGCATAAAGACAAGTCATGGGGAAAGAACTGAGCATAGAGGTGTCCCTTGCGCAGGGGAGAGGGAGAAGCAAAAAACCTAGGAGCTTTTGAGGCTGGAAGGATGGTCGCCTTTGAGAACAGACAGACGGTGGTTGCCTGTGTGACTGTGAGGACAGAAATTTATCTGCTGTGACCCTGCGGAGCACAGAGAAGATGGGATGGCAGAGGGGTTCTGAGAGGGAAGCTCTGGGATACTGGAGGAGGTGGTTTCTCTGGCCACTATGTTGGCCAGCATGTAGGGAGGGGAGTTCCCAAGGTGGTCCCCATCTCCACAGCACTCTCTGTCTCTCTCTCTCTTTCTCTCTCTTTCTGGGTGGCTGGCTGCTTGAATCTGCCTGGTGCTGCCCTGCTTGCAGGAGCTTTCTGGAGCATTCTGGAGCATTCCTGAGCAGCCTTTCTCTCCATACAGATGGGGGATGAGAGCCCCAGAGTTCAAGAGGGATTGCAGGTCGGTGTCTCAGAACCCCCAGGTCCTTGGGCTGCTCAGTGTCTCATCTCAGTGGGGCTGGCCATGACCCAGCTGTCTGCTTCTTTTTCTCTAG
Seq C2 exon
TCCAGTTCTGGCAGGGCCACACAGGGATCAGGTACAAGGAGCAGAGGGAGAGCTGTCCCAAGCACGCTGTTCGCTGTGACGGGGTGGTGGACTGCAAGCTGAAGAGTGACGAGCTGGGCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137747-TMPRSS13:NM_001077263:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=69.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)