BtaINT0150460 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017650 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr15:24579719-24580368:-
Coord C1 exon
chr15:24580270-24580368
Coord A exon
chr15:24579862-24580269
Coord C2 exon
chr15:24579719-24579861
Length
408 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
TCCCATCTACCTCCCTGCAGCCC
3' ss Score
10.6
Exon sequences
Seq C1 exon
ACACCGTGGGCGCCGTGTGCCTGCCGGCTGAAGAGCGGGATTTTCCGAGGGGCTCGGAGTGCTGGGTGTCTGGCTGGGGCCACACTGACCCCGGCCACA
Seq A exon
GTGAGTCAGCTCCCAGGGCCCTGGGTGCACAGGATGGGGGGTCGGGGGTGGGAGGGGAGGAATCTGTCCCCAGAAGTGAGGCACCGCAGCCTCCTCCTCCCTGGCCACAGGGCAGCATAAGCCCCCTTCTCCTCTGGCATCACCCTCGGTTAGATGGGGGCCCCAGGGTCCTTCTGGGAGAACAAACTGGTATTTTCCCTGAAACCCAGGCCCTTTCTTCTCCCTCCCCGCCTCCCAGGAGTGCCAGGGCCTCAGCATCAGGGTGTATGTGTGATGCATACCCCTCCCCTCCAAGTCTGATGGACCCTCCTGGCCAGAGTCCTGGGCTTCCATGTCCCTGGGGTCGGCCCTCTAGCACCTCTGCCTCTCCCGCCTCCGTCTGTGACCCTCCCATCTACCTCCCTGCAG
Seq C2 exon
CCCGCAGCTCCGACGTGCTCCAGGACTCCGTGGTCCCTCTGCTCAGCACCCAGCTCTGCAACAGCTCTTGCGTGTACAGCGGGGCTCTGACGCCCCGCATGCTGTGTGCCGGCTATCTCGACGGGAGGGCGGATGCGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017650:ENSBTAT00000023479:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.3=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAGAGCGGGATTTTCC
R:
CCCTCCCGTCGAGATAGCC
Band lengths:
202-610
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development