BtaINT0150468 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032152 | TMPRSS6
Description
transmembrane protease, serine 6 [Source:HGNC Symbol;Acc:HGNC:16517]
Coordinates
chr5:75870208-75871202:-
Coord C1 exon
chr5:75871066-75871202
Coord A exon
chr5:75870557-75871065
Coord C2 exon
chr5:75870208-75870556
Length
509 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACT
5' ss Score
6.6
3' ss Seq
TGTCTCTCTCTGCCTTACAGGGT
3' ss Score
11.51
Exon sequences
Seq C1 exon
GCCCCACCAGCAACGGCCTGCAGAAGGTGGACGTGCAGCTGATCCCGCAGGACCTGTGCAGCGAGGCCTACCGCTACCAGGTGACACCCCGCATGCTGTGCGCCGGCTACCGCAACGGCAAGAAGGATGCCTGCCAG
Seq A exon
GTGACTCCCACGGAGTGTGCCAGGGGCGGGGAGAGGGCATGGCCCTCAGCTCACAGCAGCCTGCAGCAGCCTCACGGCAAGGTGGGCTTGGCTGTCCCCACTTTGTGGGTGAGGAAACTGAAGGTTGGGAGGTTGAGAGACTGCCTCCAGGTTGCAGACCCCAGATCAGAAAAGACCCCAGGTGCCAGGTCTGAGACCCAGCCCCAGCTCTGCTTCTTATCCTCTGAGAGGCACTTTGCCCAAGTGACCCAGCAGAGAGGACTAGATGGAGCCCACAGAAGGGAGGCAGAGCTGGACAGGGCACTGGGATGCACATTCAAGCTTCCATGACAGCCAGACCCTGCTGAAGGCCAGGCTGGGTTGGTTCGGGCTCCCTCCATGTATCGGAGGCTTCCAAAGGGGATGTGATTTTCCTGCTGTCACTCTCAGACTATCCCCAGTAGTCCAGCCCTTTACCTGGAAGTGGATTGCTTTACCCTGACGTAGTCCTGTCTCTCTCTGCCTTACAG
Seq C2 exon
GGTGACTCAGGTGGCCCGCTGGTGTGCAAGGAGCCCAGTGGCCGTTGGTTCCTGGCAGGGCTGGTCAGCTGGGGTCTGGGCTGCGGCCGGCCCAACTATTTTGGCGTCTACACCCGCATCACTGGTGTGATAGGCTGGATCCAGCAGGTGCTGACTTGAGGAGCTGCCCCCCTGCAGAGCAGGGGCCTACTTTTTGGACTCAGAGAGCCCAGGGCACCCACCGGGGGGTTGGGAGCAAGTATTCTTCAGGCAGCAGGGCCTGGAGGGGACAGGAGGTGGTATTTCCTGTCCCCCAACCTGATGCCTGATATCAGCCTCAGTGAGGGTACGAGGGAGGTGGGCCATCCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032152:ENSBTAT00000045605:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.6=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.0=86.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACCGCTACCAGGTGACA
R:
AATACCACCTCCTGTCCCCTC
Band lengths:
354-863
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]