RnoINT0153428 @ rn6
Intron Retention
Gene
ENSRNOG00000000184 | Tmprss6
Description
transmembrane serine protease 6 [Source:RGD Symbol;Acc:1307138]
Coordinates
chr7:119659973-119660351:-
Coord C1 exon
chr7:119660215-119660351
Coord A exon
chr7:119660010-119660214
Coord C2 exon
chr7:119659973-119660009
Length
205 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TCATCTCTCTCCTGTTTTAGGGC
3' ss Score
12.79
Exon sequences
Seq C1 exon
GTCCTGGTAGCAGCACCCTTCAGAAGGTGGATGTGCAACTGATCCCTCAGGACCTGTGCAATGAGGCCTACCGTTACCAGGTGACCCCACGCATGCTCTGTGCTGGTTATCGCAAGGGCAAGAAAGATGCCTGCCAG
Seq A exon
GTAACTACCTATGGGGTGTGGGTTGGAGGGAGGATGACTGCCCCCATTTTACAGATGAGGAGCCTGAGGCCTTCAGAGATTACAGAGGCACAGAGCAGACCCTTGGGGTGGAAGGTCTTTGTCTCTGCTCCTATGCTGAGACCTTGGGGCTGGGGTCACACAAGGAGACCCTCACCCTGAGGCGATCATCTCTCTCCTGTTTTAG
Seq C2 exon
GGCGACTCTGGAGGCCCACTGGTTTGCAAGGAGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000184:ENSRNOT00000000200:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.1=100)
A:
NA
C2:
PF0008921=Trypsin=PD(5.6=84.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGTAGCAGCACCCTTC
R:
GGGCTCCTTGCAAACCAGTG
Band lengths:
172-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]