BtaINT0150471 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032152 | TMPRSS6
Description
transmembrane protease, serine 6 [Source:HGNC Symbol;Acc:HGNC:16517]
Coordinates
chr5:75895854-75896321:-
Coord C1 exon
chr5:75896137-75896321
Coord A exon
chr5:75895896-75896136
Coord C2 exon
chr5:75895854-75895895
Length
241 bp
Sequences
Splice sites
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
3' ss Seq
TGTTCGTTTCCTTTTAACAGAAG
3' ss Score
8.85
Exon sequences
Seq C1 exon
GGAGGGACCATTCACGTGCTTCTTCTGGTTCATCCTCCAAATCCCGGAGCACCGCCGGCCAATGCTGAGCCCCGACGTGGTGCGGGCCCTGCTGGCGGAGGAGCTGCTGTCTGCGGTCAACAGCTCGGCCCCCGCTCCCTATCGGACCGAGTATGAGGTGGACCCCGAGGGCCTGGTGATCCTGG
Seq A exon
GTCAGTACTGGAGACGAGGAACATGGGACAGTCTGGCGAGGCCCGGCAAGCCTGCCTCCAGGGATGGCTCCTCCCACCCCCCAACCCCAGTGGCCAGGAGCCAGGACTGAGGGGTGGGTCATGGGGGACGGTGGGCAGTCAGGGTCAATCTCAGACAGGCTCTGATAGTCTCTTCTATTTTTATTTTCATTTCATTTATTTATTCTCTCTGCTCATTTGTTTGTTCGTTTCCTTTTAACAG
Seq C2 exon
AAGCCAGCGTGAAAGACATAGTTGCACTGAATTCCACGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032152:ENSBTAT00000045605:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PD(37.4=58.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACCATTCACGTGCTTCTT
R:
AGCGTGGAATTCAGTGCAACT
Band lengths:
222-463
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]