RnoINT0153433 @ rn6
Intron Retention
Gene
ENSRNOG00000000184 | Tmprss6
Description
transmembrane serine protease 6 [Source:RGD Symbol;Acc:1307138]
Coordinates
chr7:119678871-119679337:-
Coord C1 exon
chr7:119679159-119679337
Coord A exon
chr7:119678913-119679158
Coord C2 exon
chr7:119678871-119678912
Length
246 bp
Sequences
Splice sites
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
3' ss Seq
TGTTCGTTTCCTTTTGACAGAAG
3' ss Score
7.34
Exon sequences
Seq C1 exon
GGAGGGACCCCTTATCTGCTTCTTCTGGTTCATCCTTGACATCCCCGAGTACCAGCGACTGACCCTGAGCCCTGAGGTGGTGCGCGAGCTCCTGGTGGGTGAGCTACTGTCCAACAGCTCAGCCTTGGCTTCCTATAGGACCGAATATGAGGTGGACCCGGAAGGCCTGGTGATACTAG
Seq A exon
GTCAGTACTGCGGGGAATCCTGGCGGGGGTTCGAGCAGCAAGGCCAGGCAGAGGTTGCCCCCTTCCGGTGGGGTGTGGTGGGGATGCTCAGGTGACTCTGGAGCCAGGACAGAGGGCGGGGGAGGACAGCATGGAGGGCTTCCCTTAGCCAAGCCTGGCTCGGCTGCTCTTCCTTGTTCTTATTTTCGGTGATCTATTTATTTGGCCTTGCCCTTGTTTATTTGTTTGTTCGTTTCCTTTTGACAG
Seq C2 exon
AAGCCAGCGTGAACGACATAGTCGTACTGAATTCCACGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000184:ENSRNOT00000000200:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PD(41.5=72.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGACCCCTTATCTGCTTCT
R:
CCAGCGTGGAATTCAGTACGA
Band lengths:
219-465
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]