RnoEX0092136 @ rn6
Exon Skipping
Gene
ENSRNOG00000000184 | Tmprss6
Description
transmembrane serine protease 6 [Source:RGD Symbol;Acc:1307138]
Coordinates
chr7:119673960-119679337:-
Coord C1 exon
chr7:119679159-119679337
Coord A exon
chr7:119678871-119678912
Coord C2 exon
chr7:119673960-119674164
Length
42 bp
Sequences
Splice sites
3' ss Seq
TGTTCGTTTCCTTTTGACAGAAG
3' ss Score
7.34
5' ss Seq
TGGGTACGC
5' ss Score
6.74
Exon sequences
Seq C1 exon
GGAGGGACCCCTTATCTGCTTCTTCTGGTTCATCCTTGACATCCCCGAGTACCAGCGACTGACCCTGAGCCCTGAGGTGGTGCGCGAGCTCCTGGTGGGTGAGCTACTGTCCAACAGCTCAGCCTTGGCTTCCTATAGGACCGAATATGAGGTGGACCCGGAAGGCCTGGTGATACTAG
Seq A exon
AAGCCAGCGTGAACGACATAGTCGTACTGAATTCCACGCTGG
Seq C2 exon
GCTGTTACCGCTACAGCTACGTGAACCCGGGCCAGGTCCTCCGGTTGAGGGGGCCCGACCAGCAGACCACTAGCTGCCTGTGGCACCTGCAGGGGCCCGAGGACCTCATGCTCAAAGTGCAGCTAGAGTGGACTCGGGTTGATTGCAGAGACAGGGTGGCGATGTACGACGCAGCTGGGCCCCTGGAGAAGAGACTTATCACCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000184_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PD(41.5=72.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGGCCTGGTGATACTAG
R:
TGCACTTTGAGCATGAGGTCC
Band lengths:
142-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]