GgaEX0018877 @ galGal3
Exon Skipping
Gene
ENSGALG00000012483 | F1NDU7_CHICK
Description
NA
Coordinates
chr1:53447556-53452026:+
Coord C1 exon
chr1:53447556-53447740
Coord A exon
chr1:53451047-53451088
Coord C2 exon
chr1:53451822-53452026
Length
42 bp
Sequences
Splice sites
3' ss Seq
ATATATTTCTTTTCTAACAGAAT
3' ss Score
8.75
5' ss Seq
TGGGTAGGC
5' ss Score
6.03
Exon sequences
Seq C1 exon
GGAGGGGGCTCTGACCTTCTTCTTCTGGTTTACCCTCCAAATTCCTGAGAGTCAGCAGAAGGAGATGACTGCTGAGAGGGTAAACGCAGTGCTCCACCAAGAGCTTACCACCAGCTTCAACAGCTCGGGCAGCCTGTCCTACCAGGCAGAATACAGGGTCAACCCAGACTCGCTGATTCTGCTGG
Seq A exon
AATCCACTGTGAAAGACATAGTAGTGCTGAAATCCACTCTGG
Seq C2 exon
GTTGCTACAGATACAGCTATGTCCAGGAGGATGACATCCTAAGACTGGAGGGTCCTGACTACCTGGCCTCCAGTTGTCTTTGGCACCTCCACAGCCTCAAGGGCTACATGATCAAGCTACGCTTAGAGTGGACTCTGCCGGACTGCAGGGACCGCCTGGCTATGTATGATGCAGCTGGTCCCCTGGAGAAACACCTCATCACCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012483-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PD(42.5=71.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGCAGAATACAGGGTCA
R:
TGGAGGTGCCAAAGACAACTG
Band lengths:
136-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]