BtaEX0037180 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032152 | TMPRSS6
Description
transmembrane protease, serine 6 [Source:HGNC Symbol;Acc:HGNC:16517]
Coordinates
chr5:75891607-75896321:-
Coord C1 exon
chr5:75896137-75896321
Coord A exon
chr5:75895854-75895895
Coord C2 exon
chr5:75891607-75891811
Length
42 bp
Sequences
Splice sites
3' ss Seq
TGTTCGTTTCCTTTTAACAGAAG
3' ss Score
8.85
5' ss Seq
TGGGTACGC
5' ss Score
6.74
Exon sequences
Seq C1 exon
GGAGGGACCATTCACGTGCTTCTTCTGGTTCATCCTCCAAATCCCGGAGCACCGCCGGCCAATGCTGAGCCCCGACGTGGTGCGGGCCCTGCTGGCGGAGGAGCTGCTGTCTGCGGTCAACAGCTCGGCCCCCGCTCCCTATCGGACCGAGTATGAGGTGGACCCCGAGGGCCTGGTGATCCTGG
Seq A exon
AAGCCAGCGTGAAAGACATAGTTGCACTGAATTCCACGCTGG
Seq C2 exon
GCTGCTACCGCTACAGCTACGTGGGCCAGGGCCAGGCCCTCCGGCTGAAGGGGCCCGACACCCTGGCCTCCAGCTGCCTGTGGCACCTTCAGGGCCCCCAGGATCTCATGCTCAAACTCCGGCTCGAGTGGAAGCTGGCTGACTGCCGGGACCGGCTGGCCATGTATGACGTGGCGGGGCCTCTCGAGAGGAGGCTCATCACCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032152_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PD(37.4=58.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTATGAGGTGGACCCCGAG
R:
GATCCTGGGGGCCCTGAAG
Band lengths:
142-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development