GgaEX0018877 @ galGal4
Exon Skipping
Gene
ENSGALG00000012483 | TMPRSS6
Description
transmembrane protease, serine 6 [Source:HGNC Symbol;Acc:HGNC:16517]
Coordinates
chr1:51319861-51324331:+
Coord C1 exon
chr1:51319861-51320045
Coord A exon
chr1:51323352-51323393
Coord C2 exon
chr1:51324127-51324331
Length
42 bp
Sequences
Splice sites
3' ss Seq
ATATATTTCTTTTCTAACAGAAT
3' ss Score
8.75
5' ss Seq
TGGGTAGGC
5' ss Score
6.03
Exon sequences
Seq C1 exon
GGAGGGGGCTCTGACCTTCTTCTTCTGGTTTACCCTCCAAATTCCTGAGAGTCAGCAGAAGGAGATGACTGCTGAGAGGGTAAACGCAGTGCTCCACCAAGAGCTTACCACCAGCTTCAACAGCTCGGGCAGCCTGTCCTACCAGGCAGAATACAGGGTCAACCCAGACTCGCTGATTCTGCTGG
Seq A exon
AATCCACTGTGAAAGACATAGTAGTGCTGAAATCCACTCTGG
Seq C2 exon
GTTGCTACAGATACAGCTATGTCCAGGAGGATGACATCCTAAGACTGGAGGGTCCTGACTACCTGGCCTCCAGTTGTCTTTGGCACCTCCACAGCCTCAAGGGCTACATGATCAAGCTACGCTTAGAGTGGACTCTGCCGGACTGCAGGGACCGCCTGGCTATGTATGATGCAGCTGGTCCCCTGGAGAAACACCTCATCACCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012483_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PD(42.5=71.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGCAGAATACAGGGTCA
R:
TGGAGGTGCCAAAGACAACTG
Band lengths:
136-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]