MmuEX0048178 @ mm9
Exon Skipping
Gene
ENSMUSG00000016942 | Tmprss6
Description
transmembrane serine protease 6 [Source:MGI Symbol;Acc:MGI:1919003]
Coordinates
chr15:78285344-78290353:-
Coord C1 exon
chr15:78290175-78290353
Coord A exon
chr15:78289860-78289901
Coord C2 exon
chr15:78285344-78285548
Length
42 bp
Sequences
Splice sites
3' ss Seq
TGTTCATTTCCTTTTGACAGAAG
3' ss Score
7.3
5' ss Seq
TGGGTACGC
5' ss Score
6.74
Exon sequences
Seq C1 exon
GGAGGGACCCCTCACCTGCTTCTTCTGGTTTATCCTTGACATCCCTGAGTACCAGCGACTGACCCTGAGCCCTGAAGTAGTGCGCGAGCTCCTGGTGGATGAGCTACTGTCCAACAGCTCAACCCTGGCTTCCTATAAGACCGAATATGAGGTGGACCCGGAAGGCCTGGTGATCCTGG
Seq A exon
AAGCCAGTGTGAACGACATAGTCGTACTGAATTCCACGCTGG
Seq C2 exon
GCTGTTATCGCTACAGCTATGTGAACCCAGGCCAGGTCCTCCCATTGAAGGGGCCTGACCAGCAGACCACAAGCTGCCTGTGGCATCTGCAAGGGCCCGAAGACCTCATGATCAAAGTGCGGCTGGAGTGGACCCGGGTCGATTGCAGAGACAGGGTGGCGATGTACGACGCAGCTGGGCCCCTGGAGAAGAGACTTATCACCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016942_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PD(43.1=77.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCCTGGTGGATGAGCTA
R:
GACCTGGCCTGGGTTCACATA
Band lengths:
132-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: