BtaINT0150499 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000718 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr7:22459473-22460564:-
Coord C1 exon
chr7:22460393-22460564
Coord A exon
chr7:22459739-22460392
Coord C2 exon
chr7:22459473-22459738
Length
654 bp
Sequences
Splice sites
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
3' ss Seq
CTATCCTTCACATCCCACAGCTA
3' ss Score
8.22
Exon sequences
Seq C1 exon
ACTGCGGCCTGGCGCCGGCTGCGGCGCTGACCCGGATCGTGGGCGGCAGCGCTGCGGGCCGCGGGGAGTGGCCGTGGCAGGTGAGCCTGTGGCTGCGGCGGCGGGAGCACCGCTGCGGGGCTGTGCTGGTGGCGGAGAGGTGGCTGCTATCGGCGGCACACTGCTTCGACGT
Seq A exon
GTGAGTCCTGAAGGTCCTGGCCCACGTCGGTGGTTCACCAATCCCAGCCCCTGAAAATTCAGAGCGTGGCGCCTCCGCCTTCGCCCGGAACGCCCTTTCCACACACTCACAGCCCCGGGTCCCTCCTTCGCGCAAACCTTCCCTGCCTACCCACCACCCCAAACCTGGCTGCAAGGGGTGAGTCCAGCCCCCACCAAATGCGGGGTTGCAGGGGGCCTCCGGCCAGATCTCTGGGGGGCAGTGAGACACTTTCATCCCCAGCCCAACTGTCTTGGACCGGCACCACCCTAAAGGCCCTCCAAGGTGAGAGGAAGTTCCCCTTCCTGGCAGGGTGCCCAGGAGGAGGGCCGGCCAGGGTTCCTGCCTTCCATGGAAACACCCATCTCAGGATGCGCCTCACAGTGCCGAGGTCGGAGCGGTTGGGAGGTGGGACAGGGGGTCCTCCAGCCACCAGAGCCCCAACATTAGGCGGAAATGGACACAGCGTGTAGTGTCACCTCAGTGCCTGGTGGCCCCTCATCCTCCCCGCCCCCCCCAATTCTAGGGAAAAGGAACACTCAACTGAGGTCAGGTGCCGGCCACGTGTGCAGGGGAGCCCCCGATAGGGCAGGGGCGTGAGGACCCGGGCGGACGCCTATCCTTCACATCCCACAG
Seq C2 exon
CTACGGGGACCCCAAGCAGTGGGCAGCCTTCCTGGGCACGCCGTTCCTGAGTGGCGCTGATGGGCAGCTGGAGCGTGTGGCGCGCATCCACAAGCACCCCTTCTACAACCTCTACACGCTCGACTACGACGTGGCACTGCTCGAGCTGGTGGGGCCAGTACGCCGCAGCCGCCTGGTGCGGCCCATCTGCTTGCCTGAGCCCGCCCCACGGCCCCCCGACGGCGCGCGCTGCGTCATCACAGGCTGGGGCTCTGTGCGCGAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000718:ENSBTAT00000000958:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.8=77.6)
A:
NA
C2:
PF0008921=Trypsin=FE(39.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGACCCGGATCGTGG
R:
CTCAGGCAAGCAGATGGGC
Band lengths:
347-1001
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]