RnoINT0153460 @ rn6
Intron Retention
Gene
ENSRNOG00000032429 | Tmprss9
Description
transmembrane serine protease 9 [Source:RGD Symbol;Acc:1309581]
Coordinates
chr7:11679941-11680851:-
Coord C1 exon
chr7:11680680-11680851
Coord A exon
chr7:11680204-11680679
Coord C2 exon
chr7:11679941-11680203
Length
476 bp
Sequences
Splice sites
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
3' ss Seq
CACATACGCGCGCCCTGCAGCTA
3' ss Score
6.15
Exon sequences
Seq C1 exon
ACTGCGGCCTGGCACCCCCAGGGGCCCTGACCCGGATAGTGGGCGGCAGCGCAGCCTCGCTTGGAGAATGGCCCTGGCAAGTGAGCCTGTGGCTGCGGCGCAGGGAGCACCGCTGTGGGGCGGTACTGGTGGCCGAGAGGTGGCTTCTGTCTGCAGCACACTGTTTCGACGT
Seq A exon
GTGAGTCCTGCCCCGGGTGCGGGAGACCACCTGTCCTTCCTCTGACCCCAAGGCCCGTCCTTGGCAGGGTTCTGGGCATGGAGGACCCCTTAAGGGACCCCCAGCTTGTGCCAGTCGGTCACAAGGTGAAAGGACAGATGGGAGACTGCACTCTGGAGGGTTGAGCGTCCAGAGCCCTAGCATAAATGACCGGGGCTGCTGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATGCACATGTCCCCCATTTCCACTAGTTAACCTAGTGGGGGTCCAGAGCCTTGATACCTAGTGGGTTGGTTCTCCAGACGGTGTTTGAGCAGTGGTGGGGTTCCCTCAGAGGGACACCCTTCATGGCTGCGTGAGCTTGAGTTGGGGAGGGAACAGAGCAGCCCATTTCCACTGGGACGGTCGGTGTCTTGGGCAGGCGTGGGACAGTGACACTGCCCACACATACGCGCGCCCTGCAG
Seq C2 exon
CTATGGGGACCCTATGCAGTGGGCAGCCTTCCTGGGGACCCCGTTCCTGAGCAGCACGGAGGGCCAGTTGGAGCGTGTGGCACGCATCTATCGCCACCCGTTCTACAACATCTACACGCTGGACTATGACGTGGCGCTGCTGGAGCTGGCGGGGCCTGTGCGCCGTAGCCGCTTGGTGCGACCCATCTGCCTACCAGGTCCCACTCGTCCTCCTGAAGGCGCGCGCTGTGTCATCACTGGCTGGGGTTCGCTGCGAGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032429:ENSRNOT00000049221:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.9=77.6)
A:
NA
C2:
PF0008921=Trypsin=FE(38.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGGCCCTGGCAAGTGAG
R:
GAACCCCAGCCAGTGATGAC
Band lengths:
356-832
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]