BtaINT0150506 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000718 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr7:22474928-22476943:-
Coord C1 exon
chr7:22476830-22476943
Coord A exon
chr7:22475100-22476829
Coord C2 exon
chr7:22474928-22475099
Length
1730 bp
Sequences
Splice sites
5' ss Seq
GCGGTCAGT
5' ss Score
6.52
3' ss Seq
TGGTGATCTCTGTCTTGCAGACT
3' ss Score
9.16
Exon sequences
Seq C1 exon
GCCACTGTCCAGGGAATGTCTTTTCCTGCGGGAACAGCCAGTGTGTGACCAAGGTGAACCCAGAGTGTGATGACACCGCGGACTGCTCCGACGGCTCCGACGAGGCCCACTGCG
Seq A exon
GTCAGTCTGCCTGTCTGAACTGGCCCACAGGCCACATTGCCTTTCCAGGGTCAGCTGCTGGCTCTGCGCTCTGGCCCACTGTGCCCATCACATGCTGTCGTGTGGGTCTGGCATTCACTGAAGCTGGGCAGAGAAAGGGAGGGAGCACCTGTGATATGACAAGAAACGTGAGCAGGAAGCAGAGGAGGGAGAGCTCGAGGTGTGTGGGTGAGAAGGGAAGATATCAGGCTGATAAGAGGTCCTGGTCAAACTGTGGGAAGCCTCGAATACCAGGAACTGGAGGTCTGTCCTGTACATAGTGAGGAGTCACCAAAAGGATCTGAGCAAGGGAAAATTACAGTTGAAATGTCGTAAGAGTAGTCAACATTTTTCTAACAATGCTAGCCCATGCGATAAGGCAGGAACAGTGGTATAAGTATTGGAAAGGAAGAGGGAAAACTATCAAAATTTGGATATGATTATCTAAATGAATCAATATATTGACTAAAAGGAGATTGGAAAAATAAGACAGTTCAACAATGAGGAGGAGATAAATCCTAGCACATAAAAAAGTTATTGCTTTTCTTTATACAAGTAAGAACAGGTTAGAAGATATAATGGAAAAAATCTCACTGTTGATCAACGTGTGCTCAGTCGCTCAGTTGTGTTTGATTTTTTGTGACCCCACAGACTGTAGCCTGCCAGGCTCCTCTGCCCATGGGATTTCCCAGGCAAGAATACTGGAGTAGGTTGCTGTTTCCTCCTCCGGGGGATCTTCCTGACCCAGGGATTGAACCTGTGTCTCTCATATCTCCTGCTTTGGCAGGAAGATTCTTTCCCACTGTGCCACCTAATCAATAGGAACACAAAATAAACATTTCATGTCTATAATAGCAATTAAATAGAATTAGGAAATGTTGCTGAAGGACATAAAAGGAGACTAAATAAACAGATATGGCATCCTATGAAAAGATGGACATATAAAGACTTGGAAACTTTCAAAATACATGGTGAAGAACACATTCATAGTGTCTGGTGCCTGGATGTGCAAGATAATATAGAGGCTGGTTGAAATTGGCAGGTGTGGTCAGGAGTCCCTGCAACCCCCTCAGACTCAGTGATTCACTGGAGGTACGCATAGGACTTGGTAAAGCTGCAGTATGTGTGGTTATACCTTCTTACAGTGAAAGGATACAGCTGAAAGTCAGCAAAGAAAAGTGCAGAGTCCAGGAGAGACAAAGCTCAAGCAAGCTTCCGTTTAGCCTCTGCCAGTGGAGTCAGGTGGACAGTGCTTAACCAATTTGCCCAGAAGCATATGTGGCATCACACACACAGTGTTTCCAAGCCGGAGGAGCTCACCCAAGTCTTGGTGTCCAGGGTTTTGTGTTGGGGGTTGGTCACATAGGTACATAGCACTCATATAGCTGAGTTTAGTGTATGATTGTCTTGGATCTGCCAAAACAGAGGACCTCAGGCTCAGTGGATGAGACAGCAGAAGTTTACTCTCTCCCTGCTCTGGAGGCTAGAAGGCTGAGAGGAAGGAGTTGGCAGGGCCAGTTCCTTCTGAGGCCGTGAGGGAGACTCTGTTCCATGTGGTCTCCCAGAATCTGGTGCTTTGCTGGTTCAGATCTTTGACATTTGGATGTGGGGACCGTGGGGATGAGAGACTGGAGACAGATGTGCCAGGATGGCCCCTGTGCAACTGCAGTCCTGCCTTCTGGGGGTCCTGGTTGGTGATCTCTGTCTTGCAG
Seq C2 exon
ACTGTGGCTTGCAGCCTGGCTGGAAGACAGCTGGCAGGATTGTGGGTGGTGTGGAAGCGTCCCCAGGGGAGTTCCCTTGGCAAGTCAGCCTCCGTGAAAACAACGAGCACTTCTGTGGGGCCGCCATCATCAGCGCCAGGTGGCTGGTGTCCGCTGCCCACTGCTTCAACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000718:ENSBTAT00000000958:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=97.4)
A:
NA
C2:
PF0008921=Trypsin=PU(19.2=75.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACTGTCCAGGGAATGTCT
R:
CACCTGGCGCTGATGATGG
Band lengths:
256-1986
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]