RnoINT0153466 @ rn6
Intron Retention
Gene
ENSRNOG00000032429 | Tmprss9
Description
transmembrane serine protease 9 [Source:RGD Symbol;Acc:1309581]
Coordinates
chr7:11691357-11692534:-
Coord C1 exon
chr7:11692421-11692534
Coord A exon
chr7:11691529-11692420
Coord C2 exon
chr7:11691357-11691528
Length
892 bp
Sequences
Splice sites
5' ss Seq
GTGGTCAGT
5' ss Score
4.85
3' ss Seq
GGTGATCCCGTGTCTTGCAGACT
3' ss Score
7.52
Exon sequences
Seq C1 exon
GCCACTGCCCCGGGAATGCCTTCTCCTGTCAGAACAGTCAATGCGTGAGCAAAGAAAACCCGGAGTGTGACGACAGAGTGGACTGCTCTGATGGGTCTGACGAGGCTCAGTGTG
Seq A exon
GTCAGTGTCTGCGTGGCGTGGGCGCACAGTGAATGTGGTTCCTGAGCTGGACAGGGGAGGGCGGGAAGGGAGGTGTGTTGGGAGAGGGGACAATCCTCAGAGAAAGCAAGGGTGGGAGCCTAGAGCTCTATGCCGCCAGGAGCAAGGACTGCTCAGATCTAAGCAAGAAGTAAGAAAATACCATGGTATTTTATCACATATTGTGATAATCAATGTTTCCAGTATCCTCAGCCCGCACAGTGAGGCAGCAGGAGGGCCCTCACCTGTTTTGACAAGAAACTGTATATTTTTGTTCCCAGTCCCGGGCAGGGCAGGAACTCAAGCCAAGGATGGAGGTAGGCTGGGCTTGCTCTCTCCTAATCTCATTGCAGCCCAGGATCTCCAGCCTAGGGGTTGACACCACTCACAGTGGGCTTAGCCCAGCAGCAATCATTACTAATCAAGAAAGTGCCCCACAGGCCTTGGTGGTGCAGGAGTGTCATCCAGGCACCCAGGAGCTGAGGCAGGAAGACCATGAGTTCCAGGCCAGCTTGTCTGTTTTAAAATAAAAATAATAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTTGGTCCCCAGCTCCGAAAAAAAAAAAAAAAGAACAAAAATAGAAAAATAAAAATAATAGGTCACACAACCTTCATGCTCTGGCACCTGGCCTGAGCCTTTCTCTGACACTGACTGATGTGTGTGACCTTGGATGTCTGATCCCTGAGGTTGGGTGGGGCTTCAAGAAGATGGGGCAGCTCCAAATAACAGGTAGGGGACACCATGTACCTGGGGCCAAATGATGAGTAACGGTGGCCCCTGGGTCACCGTCTGGCTGGTGATCCCGTGTCTTGCAG
Seq C2 exon
ACTGCGGCTGGCAGCCTGCCTGGAGATCAGCTGGAAGGATCGTGGGCGGAGCGGAGGCGGCTCCGGGAGAGTTCCCCTGGCAGGTCAGCCTCCGAGAGAATCACGAACACTTCTGCGGCGCCACCATCATCGGTGCCCGGTGGCTGGTGTCTGCTGCCCACTGCTTCAACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032429:ENSRNOT00000049221:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=97.4)
A:
NA
C2:
PF0008921=Trypsin=PU(19.2=75.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGGGAATGCCTTCTCCT
R:
GCAGTGGGCAGCAGACAC
Band lengths:
270-1162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]