BtaINT0150621 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000575 | TNC
Description
tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
Coordinates
chr8:105974249-105975358:-
Coord C1 exon
chr8:105975262-105975358
Coord A exon
chr8:105974411-105975261
Coord C2 exon
chr8:105974249-105974410
Length
851 bp
Sequences
Splice sites
5' ss Seq
TTGGTAATA
5' ss Score
4.19
3' ss Seq
CCCTCACCTGTCGTCCACAGGGC
3' ss Score
11.45
Exon sequences
Seq C1 exon
GTGTTCCTGAGACGCAAAAATGGACGTGAGGACTTCTATCGAAACTGGAAGGCCTACGCTGCTGGATTTGGGGACTTAAAAGAAGAGTTCTGGCTTG
Seq A exon
GTAATACAGCCTGCGCATTCATGCCCCAAATGCCCATTCGGCAACCCTGTTGTCTGTCCTAACCCACAGGGAAAAGTGGGAGAAATGGATTAGGAGGAAATGATAGCTCTGGTGGTCGACACAGAATATCAGATTCTCAATGGAAAAAACTTGAGATTCTCTGGGTCATTAAAAATAAAAATCTGTTCGGAGGAGAGCCAATAGCCCGACCCTAAGAATAAGCCTAGCCTTCAGTCAACCCCTGGGCCACTTGGAGCATTATCCTCACTGATGTCCTTCACCTATGCTGACTGGGTCCCTCAGAGCCACACCCTCCAAGCCTCCCAGCAGCCCCACAATGTACAAAGCTCCCATCTTGCACCTGGGAAAATAGCCCCAAAGAGGTTAAACTGCTGACCATAGGGATCTAGCCAATAAAGACGTGAGTGGCACCCGAATTCTCTCAGCCAGCACTACCGTGGCATCCCCCACCCCCCACTGTGACTCACACTTTGCCATAACCTGCCCCTGGCACAGGGCACCGTCATACATTCCAGCATCTGAGCCTGGGAATATCTGCCCCATTGCCGTTCACAGGTAACGAGCTTCGAGTGGAAAAGGTACGCTCTCCACCTTATTTCCTTTGATATTCACAGCACACTAGGAGATGGGCAGGGCAAAGAGGTCAACCCAATCTTAGCTGAGGCTCGGACACTGCATATGTGTCACCTGATGCTGTAACAGCAAGGAGCCGAGCAGGTGCGTCAGGCAAAGCTCTTTAGTACACATGGAGCCGCTGCTCTCAGGCGGTGAGGAGGAATGAACGCCTTGGTCACTGTGCTTCTTCGGTAACCCTCACCTGTCGTCCACAG
Seq C2 exon
GGCTGGACACTTTGAGCAAAATCACAGCCCAGGGGCAGTACGAGCTCCGGGTGGACCTGCGGGACCACGGGGAGTCGGCCCACGCCGTCTACGACAAGTTCAGCGTGGGAGATGCCCGGACGCGCTACCGGCTGAAGGTGGAGGGGTACAGTGGCACGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000575:ENSBTAT00000000752:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(15.2=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(25.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGACGCAAAAATGGACG
R:
CTGCCGTGCCACTGTACC
Band lengths:
254-1105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]