RnoINT0153596 @ rn6
Intron Retention
Gene
ENSRNOG00000058645 | Tnc
Description
tenascin C [Source:RGD Symbol;Acc:621057]
Coordinates
chr5:79794353-79795427:-
Coord C1 exon
chr5:79795331-79795427
Coord A exon
chr5:79794515-79795330
Coord C2 exon
chr5:79794353-79794514
Length
816 bp
Sequences
Splice sites
5' ss Seq
TTGGTAATA
5' ss Score
4.19
3' ss Seq
ACATTGCCTGACATCCACAGGAC
3' ss Score
7.39
Exon sequences
Seq C1 exon
GTTTTCCTGAGACGCAAAAATGGACGTGAGGACTTCTATCGAAACTGGAAGGCCTATGCCGCTGGGTTTGGAGACCGCAGAGAAGAATTCTGGCTTG
Seq A exon
GTAATACAATTCTGAAAGTTTGTGACAGATATGCCTATTTCTGTTCTCCTGGTCACTTGCCCTCCTGAAGTAAGCAATGGGGAGAGGAAAGGATTAGAGTGAAAGAAGTTTGGTAGGAGCCAAAGAATGTTGGAATAATTAAATGTTCCAGGTCATAAAAATAAAACATTATCAAACCAGGCCTGTGGACCACCCTTGCATTCAGTCAGACACTAAACCAATTATGGAACCAACCTCAGTGCTGGTCTGAACTGCTTTCCTCAAGCTCCAGACACTGAGATGGGTCTTGTGGTCACAATCTCTCACCCAGAACATCCATGCAAAGAGCAGAATTCTCATCCTACTCATTACAGAACAGACCCTCAAGGACATTGCATGGTTTACTCTATGACAATCTAGCTAATGGATAACTACACTGTCGTTCAAAATTTCCAAAGTTAGTACTACAGGGCCATCCATCACGGACACTTCAAAGCAAGCCATGTGAACAGAGCATTGTTCTCTGCACCACTGCCTGAGCCCGAGACATCCCATCCCAAAGTTCTCCATTGCTTCATGTTGATTAGGAATGTTAGAATGTACGGGTCATGTCCCCGGGCTTATCATCTTTGATCTTCAGGCTATAATAGAAAGTTGATAAGCAAAGGTATTGAACTATTTTCTTCTGAGGCTCAGAAAGATGAGATTTGTTTTGTCTGCCATCATACCAGCAAACAGAGAATGTTTCAAGTTTGCCCAATATGTCCCACTGTTGAGTGTTCCCCTGTTTCCTCGGTCACCTGCAATTACTTACCAGACATTGCCTGACATCCACAG
Seq C2 exon
GACTGGATAACCTGAGCAAAATCACAGCCCAAGGGCAATATGAGCTCCGGGTGGACCTACAAGACCATGGGGAGTCAGCCTATGCTGTGTATGACAGGTTCAGTGTTGGAGATGCCAAGAGTCGCTACAAGCTGAAGGTAGAAGGATACAGTGGAACGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058645:ENSRNOT00000084563:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(15.2=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(25.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGACGCAAAAATGGACG
R:
CTGCCGTTCCACTGTATCCTT
Band lengths:
254-1070
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]