BtaINT0150628 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000575 | TNC
Description
tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
Coordinates
chr8:106023441-106024630:-
Coord C1 exon
chr8:106024361-106024630
Coord A exon
chr8:106023627-106024360
Coord C2 exon
chr8:106023441-106023626
Length
734 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
CCCTTTCCTCTCCCAAACAGGCC
3' ss Score
11.72
Exon sequences
Seq C1 exon
GCTTGGACGCCCCCAGCCAGATTGAAGTGAAAGATGTCACAGACACCACCGCTCTGATCACTTGGTCCAAGCCCCTGGCCGAGATCGATAGCATCGAGCTCATGTACGGGATCAAAGACGTGCCAGGAGATCGTACCAGCATCGATCTCACACACGAGGAGAACCAGTACTCCATTGGGAACTTGAAGCCGGACACCGAGTACGAGGTGGCCCTCATCTCCCGCAGGGCCGACATGTCCAGCAACCCCGCCAAAGAGACCTTCACAACAG
Seq A exon
GTAATACGCCCACTCCCGGCTGCTAACAGCCCCAGAAAAGGAAGGATCACCAGACTCCTCCCCATTCCATGGCAGTGTGTCTCCCAGGCGCCTTTTACAATAGAAAAAAATGGAAAGAGGATTTTTATTTTAGAATACTGTAGCAATTGATTGATTTTTCAAAGAAAAAAACTTACCCCCAATAACCTTCTAAGGATAAAGAAAGTTTTTTGCCTGCATAGAAGATGCTGGTCTGAGATTCTTAGACATTTTGGTCAAAATAAAATTCAAATAAATATTATAAGAGTAAAATGTAGTATACGGAAAGTATGAATGGCAAAGATGCCTTCTAAGCTCTTAGACTAGGGCGCTATTTTCAAGGTACCAGAGTGTCAATCATTCATTCACTAAATATTTTTTCAGAGCTCGGTAAGCTCTCTGTAGATCATTAAAAATCCAGTGATGAAGGCAGCACACCCATCCTTACAGTCACAGAGCCAATTTGCAAGCTTTTGCATAGTTTTTATTAAGTACAAAATCATTGGCAAACATGAACGATTGAGGTATCACAGCGATTTAATAAAGAAGTGTCCAGTGTTGTCCAGATGTGTGCTTCAGCTATTGAGCCAGAGGGGTGAGTGGGTCTTTTCTCTCCAATGGCAGACACTTTTCGCGTCTCACCATGAACTATCAAGGACTCCCAGTCTCCTGTGCCTGGCGCTCTCAGTACCAGTGCCCTTTCCTCTCCCAAACAG
Seq C2 exon
GCCTGGATGCGCCCAGGAATCTCCGCCGCATCTCCCAGACAGACAACAGCATCACCCTGGAGTGGAGGAACGTCAAGGCAGCCGCCGACAGTTACAGAATTAAGTATGCACCCATCTCTGGAGGCGACCACGCGGAAGTAGAAGTCCCCAGGAGCCAACAGACCACAACCAGAACCACGCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000575:ENSBTAT00000000752:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=NA C2=0.540
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=89.0)
A:
NA
C2:
PF0004116=fn3=PU(71.4=95.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGCTCATGTACGGGATCA
R:
TTCTGGTTGTGGTCTGTTGGC
Band lengths:
351-1085
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]