RnoINT0153603 @ rn6
Intron Retention
Gene
ENSRNOG00000058645 | Tnc
Description
tenascin C [Source:RGD Symbol;Acc:621057]
Coordinates
chr5:79838363-79839602:-
Coord C1 exon
chr5:79839333-79839602
Coord A exon
chr5:79838549-79839332
Coord C2 exon
chr5:79838363-79838548
Length
784 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCCCTTTCCCTCCTAAACAGGCC
3' ss Score
11.08
Exon sequences
Seq C1 exon
GCCTGGATGCCCCCAGCCAAATTGAGGTGAGAGACATCACAGACACTACAGCACTGATCACCTGGTCCAAGCCCTTGGCTGAAATTGATAGCATTGAGCTCTCCTATGGCATCAAGGATGTGCCTGGAGACCGGACCACCATCGACCTCACACATGAAGACAACCAGTACTCCATCGGGAACCTGAAACCTGACACGGAGTATGAGGTGTCCCTCATCTCCCGCAGAGTGGACATGGCAAGCAACCCTGCCAAGGAGACCTTCATCACAG
Seq A exon
GTGAGGCATGCCTTACTGTCAAGTGAGAAAAAGACAGAGTACCAGTTCTGTCCCACTCCATGCATGAGTCTTCCAGGCTCCTTTAACACCAAAGATGGTCAAGGGCCTTTCCAACTCTGCATATTCATTTTAGATAGTAATTGGTGACTTGTTTAAAGAAAACGGGTCTAAATAACTTCCAAAACGTACCCAGGCACACATATACATGTGTGCCTATGTGCATATATGTGTGCATGTATGGGGGAGAGAGAAATGGGGGAAAGGGGAGAGAAGAGAAAAGAGAAAAGGGGGAGGGGGCTGGTCTGATCTTCTCAGACAAAATTTCTGGCTAAAATGTAATGGCTCCATGGGTAAAAGCATTTGCCTGACACCTTAGCAAATGGCATTACCTCAAAGGTATGCAAATGTCGATTATCTATCCCAAAAATACTTTACAGGAGTTTGATAAGCACCAGGTGATCAGCAATTAGCTATCAAAAATACATGATTCAACAGAACAGTTTTCATATCCACAGTCTTATCTTGGGGGCTTTGTAGTGTTCTTTAGACACAGAAAATGAACTAAATGCAGCCAATTGAAATGCCGCCTATCAATCAATCATCAAGAAAGGAGCCAGGCCTGTGCTCTTTAACTCTGTGTATCAGTTACCAAGACCGGCTTCGGAGAAATTCTGACATTTCTGTCCATTGGCAGGTGCCTTTTGAATCTCTGATCGAAATGCCATGTTTTCCTACTCTCTTCAAACCAGGTCTAATGCCAATCTTCCCTTTCCCTCCTAAACAG
Seq C2 exon
GCCTGGATGCTCCCAGGAATCTCCGTCGCGTCTCACAGACAGACAACAGCATCACCTTGGAGTGGAGGAATGTCAAGGCAGACATTGATAGTTATAGAATTAAGTATGCACCTATCTCTGGAGGTGACCATGCTGAGATAGATGTTCCAAAGAGCCAGCAAGCCACAACCAAAACCACACTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058645:ENSRNOT00000084563:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.363 A=NA C2=0.508
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=89.0)
A:
NA
C2:
PF0004116=fn3=PU(71.4=95.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGATCACCTGGTCCAAGC
R:
ATCTCAGCATGGTCACCTCCA
Band lengths:
358-1142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]