BtaINT0151126 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011706 | TNR
Description
tenascin R [Source:HGNC Symbol;Acc:HGNC:11953]
Coordinates
chr16:58008040-58012637:-
Coord C1 exon
chr16:58012476-58012637
Coord A exon
chr16:58008204-58012475
Coord C2 exon
chr16:58008040-58008203
Length
4272 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
AGCATGTGTTTTTTTCCCAGGGG
3' ss Score
7.79
Exon sequences
Seq C1 exon
GGCTGGACAACATACACAGGATCACGTCCCAGGGCCGCTACGAGCTGCGCGTGGACATGCGTGATGGGCAGGAGACCGCCTTTGCCTCCTATGACAGGTTCTCTGTTGAGGACAACAGAAGCCTGTACAAACTCCGCCTAGGAGGTTACAACGGCACCGCAG
Seq A exon
GTACCCTGGCCCCCAAGAAGCCCCCGATGGTGGTGGACGTGCAGTAGGGCCCACACTCCAGGCCGAGCTGCACTGGGCAGTGACAGCAGCACCCACAGAGCTGGTGAAGTCCCTGCTGGCCAAGGAGGAGGGTGGAGGGCTGGAAGCGCTGGCTCTGGTCCAGGCTGCCCCCCACCTGGGTTGAAACAGTCCCCTGGAGGAGGGCATGACAACGCACTCCAGTATTCATGCCTGGAGCATCCCATGGACAGAGGAACCTGGCGGGTTACAGTCCATAAGGTTTCTAAGAGTCAGACATGACTGAAGGGACTTTGGCACGCATGCAAGCTCCTCACCACTCAGGTGACCTGCAATCACTTTCTCAAGGACTTCAGTTTCCTCATCTGGAAAATCTTAATAACGATGCCTGCCCTAGTTCGCAGAGGAGACAGAAAAAATAATGTGATAAATAGAGTGAAAGTGCTTTTTGAAGTTAAAAAAAAGTACCATGCGAGGGTGAAGGATTATTTTTCTTGTCTAGATTAGTCAATATGGGCTCTCATCCAGTGAAAGCATAATCATCTATTGTCTGGATAGAAATCTCCCCTGCAATGACAGCTAGGAAAATCATCTTTGAACTAATGAAAATAAGACAGATGCCCCCATTCTGAGCTGGCCCTCCTCTAACAGCAGTCTTCATCACACCTCCATCAGGGAACAAACAACATCTCTACATGTCCCCCCACAGGCCACATGTCTTTTCAGTCCTCCACAAGAACCCATACAGGCACGTTTTCTGTAGATTTTATGACACTTCCACTGAATACAACAAGCGTCTCTATAAGCTCTGTTGCATTAAGAGTTTTATCAGGATATCGTATCCCAGTCTGATTCTTAGGCTCTGCCAATCTATTTCCTAGGTTCCCTTCCAGTACATATCCTAAAACCTGTTTTGCCAAATATTCCACTATTTGGTATATGGAGTTATTGGTCCTTTCATTAACTCCAATTATATGGCTAAATGCGAGGGTATAAATTTAGCAGCATGTTCAAGGCTCTTGGAGTTAAGACCATCAAAGTGTTGCCTCTCCAATGACTGCATCTGCTCAGCCGTTTCTCTGCTCAGCCAGGTGTCTTTTCTCCAAAGAGAAGACATGCTTTCCCTTGTTGTTCACATGAGAGATCATGCCCCATGGCAATCAGACCTGCCCGAAGTGCCCCAATAAAAGATCCAATTTACCCACACTTTGGATGTAAAATAGTCGTTTGAAATGGAGTGTATTACACAAAATGTCAGACCAAACCATTTCAGAAATAACCTGATACCAACCACTCCCTAAGATTAGAATCGTGCCTGCAGAAATCCGTCCTTATTTCTCCCACAGAAAGACAAGCAAGCCCTCCCACTTCCTCACCTGACCGAGCCCCCTCCCTCCTCCTCAGTGGCCCCAGGCTGTGCTCTTGCCTGTTGAACTTGGGCCCAACCTCCGCAGCCTCTGTGTAGCTCTGTCTCACTGCTGGACCCCGTGAAGGTCGTAGCTGTTGGACTGAGCTCTACTCTCATGATTCAGAGGCAAGTCCCACCAACAGTTTTGCCAATCATCAAAAATGAATTGCAGTCTGACCTCGTAGGTCAAATATTCAGTTCATCTTCTTCAAACGATGAGAAGCTAGGCTTATGTAGGCCCCTTCTCTGGACAACTTCACACAATGGTGGTTCTTTCCAGACTGGAAGGTCTCCAGGGAGGAGGAGCCGTCCTGTCTCTGGCATTTACTATTGCCCAAGTCCCCTGGCCTTTATCTTGCATGTTGCTCATCTTTATTGGCCCCACTAGAACAGTGGCCTCTGTGGCCTTCAATGCCAAGTTTGGTCCCTTCTCCCATCTCCATTGTTCTCGAGCCTGCAAAAATCCAATTCTCTAACCAGGACTCTTAATTGAATTGGAGCTGAACATTACAAGTAAAATTATGGCGAAAAGGTTGTTGAGCAACCTCTAAAAGTTCATCGTGTGAATTGTGAGGACTCATAAGGAGCATAAGGCATGACCTCTGCAAGAACTAAACTTTTATCTGAAAAAGAAACAGTTTGGAAGCAACTCACCACAAAATGAAGGGTACTCACTTCCAGTTTAATGTGCGTTTGGAGAAGGGGGTCTTAGAGGTTGAAGAAGGCTTCATGAAAGCAGCAGCATTTGGCTGGGATCCCAGGGGGAAAGAAACATTCCAGGGAAAGAAAATCCTGGGGGAAAATCACAGAAGGAGCAGTTAGTGTGGAGGGAGGGCAAGTGCAGAGGACCTGGCTGCCCAGGACAAGGTGTGAGTTCAGAAAGAATAGAAAGGAAGCAGGTGGAGTAGGGTGGAGTCAGACCCTGAAGGGCCTTAAGGCCAAGGGGACAGAGGAGTTCTGTCTTAATACGGTGGGCAGTGGGGAGCCATGGTGGGTCCTGAGTGACATAGTGGATGTGGAGTTTTAGGAAGATCCGAGTGTCAGCCTTAAATAGGATAAAGCAAACCTGAGTGAAGACCAGAGACCAGCTGGAGCTGCTGCATTAATCTTGGTAGGAGGTCACAAGGGCCTTGGCTGATCTTAGGAGTTAAGAGAAAAGCATAAATCCAAACAGCAGTTTGAGAGAGAAAAACCAAGACTTAGATAATAGATGGACTGAACGTATGAGGTGGATTTATGAACTAGGAACGGGATCTAGGGAGGAGACAAAGACCAACATCAGGATCATATGTGAGACAGCAGCAGGCAACATCCGAAGTGGAAGCAGGAGGGAATAGTTCCCAGGGAGGGCAGCTTCTAGGTTAGAGAGATAAGCAGAAGATGAGAATATAGAAACGTGGGTAGAGACAAAATAGGGGACTGATGGTAAAAAAAGAGTCTCTAGAAAGTAGGATTAAGCCAGGATTTTTTAAGACACAGGGATTGAGTATGAGTTAGGGTGAGAAGAGATGAAAATGCTAAAATATCAATATATATCTATCTCTATCTGTATCTATATGAAAAAAGGAAAAAAAGTAAGAACTCTTTCTGCCTTCTCCAGGACCTGGAAGAGATGAGAAAGAATGAGTTGTAGGTCGGTGGGATTAGCTCTGGGTGGAGATAAAGCCTGGTTTGTTTAGAGAGGGAGATAAAAACGATGGCATAGAAATAATAACATATGGACTTAGGGACCAAGCTGGCCTGAATGGACCAGGCTTCCCTATAAAAGAAAGACCATCCTCCTAAGAATTAAATTGTGACCAGAAGCACTTGGAGGCATTGAGTGGCCACTGTGAGTGTGGACTCAGGAAGCCACAGGATCAGAGCCATGAGTTTCCCCGGCTTAAAGTGGCCTCGGAAACATCTTAAACAACACTCATTCAATAGCATGAGCCCCTTCACAACATCTCTAACCACAAGTTCTGCCAGAGGCCAGAGGTTTGGCCAATAGTTATAAATTAATTACGATTTAATACCTTACTTAAATACTCAGTTCATATGTGTGGCCTGCACAATATGCCAACAAGAAAACCCCCAGCTTCTAAAAATAGAGATATCCCCATATTTCCAAGTAGTCTATCCCATTTATCAATAGCTCTAACTTCACAGTCTCTACCTACTGATCTTCATTCTTCTCCAAAGAGTGTTTGGTGGAGTTCTGTTTGTTTACTAAATAACCCATCAAATATTTGGAGTCAGTGATCTAGAACCTTGTCTCCCCTTACAAGTCTGCTTTTCCCCAAGATACAGCCCTGGTTTTCCCAATCACTTCTCCTCTAATATGATTAGGATTTTCTTATCATCTTGCTTCCTACAGACAGAAACTCTAGTTAGGTAATGTCCTTCTTCACATGTGGACCCAAGTTCTGAACGAGCAGATATTGACATGACCAAGGCCTGATGAGCCATGGGGAAAGCCAGGCTGCACAGTGGTGACCCGGATTACCCAGGGCAACATGACTCATCACTGTCTCCTCTGAGACACAAGGAGCCATCCATGCCTGTGTCCCAGTGCTGGCCTGGAGGAAACAGTCAAGGGTGGAGAGGGGGAGCTGAGTGAACACATTCTGAGCAGAAGGTCAAGGGAATGAGGAACTGAGTTGGAGAGAGCAGCACAATGTAGGGGACCCCAGGAGTACGTGGAGAAAGAGCTCAGTGTAGCCAGGCCGAAGCTGAATAGACACAGAGAGGTAAGTGGAAGGTCTCTGAAGCAGAAGCCAGGTTTGTTGGGCCTGGGTCAAATGTCCAGAACGTTGAGACGAAAGAATGACAAATTGGACAGCTTCAAGCATGTGTTTTTTTCCCAG
Seq C2 exon
GGGACTCTCTCAGCTACCATCAGGGCCGCCCATTCTCCACGGAGGACAGAGACAATGACATAGCAGTTACCAACTGTGCCATGTCGTACAAGGGGGCTTGGTGGTATAAGAACTGCCACCGGACCAACCTCAACGGGAAATACGGCGAGTCCAGGCACAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011706:ENSBTAT00000015545:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(25.7=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(25.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development