RnoINT0154091 @ rn6
Intron Retention
Gene
ENSRNOG00000002468 | Tnr
Description
tenascin R [Source:RGD Symbol;Acc:3886]
Coordinates
chr13:77670794-77675351:+
Coord C1 exon
chr13:77670794-77670955
Coord A exon
chr13:77670956-77675187
Coord C2 exon
chr13:77675188-77675351
Length
4232 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
CTTTCTTTTTTTTTTTGCAGGAG
3' ss Score
12.26
Exon sequences
Seq C1 exon
GGCTAGACAACATCCACAGGATAACAGCCCAGGGCCGCTATGAGCTGCGTGTGGATATGCGGGATGGACAGGAGGCCGTCTTTGCCTACTATGACAAGTTCGCTGTGGAGGACAGCAGAAGCCTGTACAAGCTCCGTATAGGAGGCTACAATGGCACTGCAG
Seq A exon
GTATTTGTGGGCTGATCCCAGGAGCACTGGGTGTGTATTCCAGTTCTAAGCTGCAACAGAACCAACAGAATTCATAGAATTCATGAGCTGGCTACTAGCCAGGAAGGAGGCTTGGCCAGCTGGGCCACTGGCTCTGATCCCACCTATCCATTCAGGAGACTCAGAATCAACTTCTTGGGACTTTACTTTCATCATCTGGAGAATTATAGTAGTGATGTCATCAGCTATATTATAATAGTGATATCTGTCCCACTTGACAGAATAGTCAGAAAACTTGCTGTAGGCACAAGGAGTGAATATATCTGAAAAATTTGCTCGGAAACAATGCAGGATAAGAGCAAAGAGTTGCTTATTTTACCGAGATTAACCAGAGTGAACTCCCATTTAGTGAGGGCAGAATTGTTTGTCCTCTCAGTAGACATCCCCTTGTAATGGTAGCTGGGAAAATGACCTTTGAACAAATGAAACAGTTCAGATTCCCCATTCTTTGAGCTGCCCCTCCCCCATTCAACCGCCAGCAGTTGTCATAGCATCCCACAAAGGAGCAGAGGACATTGCTTAATTGTCTCTCACTTGCCTTTTGTCCTGCCAAGTGAACCGTATACCTGGTTGGGTTCACAGTGGTGGGTTTTATGGTATTTTTACCAAGCATTACAACCATCTGTTTCAGCTCTGTGTACTCACAGTTTCATGAGAACACAACATCCGAGCTAGTCCCTAGTCTTTGGCTAATGTGCTCTATTACGTACCTTTCATGTTGTGCCAGGTATGCTACTGTTTGGTACGTGGAGTTACTGGACATTTCATTTCTCCAATTTTAGAGCTACAGACTGGTGTTTCCTATGACTCTTGGAATTAAAATGAACATCAAGGTGTTACCCTTCCAATTACTGCATCTGCTCCATTATTTCCTTTCTCAGCCAGGTATTGTTATTCTAAAGAGAAGACACACTTATCTTTGTTATTGTTCACAGTACAGTCATTCACAGTGGCAATCAGAGAAGCCTGAAGAGCCCCAACAAAAAGGTCCAATTTGCCACATTTTGAGCATAAAACAGCCATTGAAATGGACATTAAACAAGATGTCAGACTAAATCATTTCAAAACCAAATGGATACTCTTCATTCCCTAGAATTAGAATTGTGCCTACAGAAAAGGCTTTCATGTTTCTCCTATGGGAAGAGAAATAAGCTCACTAACCACGTTTCTGTCTCCCCACATTTCACCCTCTTCCTCCTGTTCTGTCCAATCCCACATGTTGTCTGTCTACCTTAGAGCCAGCGCTCGAAACCTCTTTCCCAGTCCAGTCTCTGTGCTGCACCCCACAGAGGGCAGAACTGTTAGACTGCATTCCTCTCCTTGTGTCAGAGGCCAGTGTGCTTGGCTAACTATTCATAAACATTAACAATCTATCCATCACCTTATATATTCAGTTCATCTTCTTCAGTAAGTAAAACCCTGGGTTTATTTAGGTTACCCCATCCCTAGTCAACTATATTCCATTCATATTGGATAGAAAACCATTCCCTCATTCCTGACATTTGTAACAGTTCCCAGTTCTTCCAGCTGTTACCGCTTCTCCAGGCCTCACTGGCAACAAGCCATGCCAGGGCCTCCAGTCCAACTAGAGTCCTTTACTCCCCATTTCTGAAGGTCTCAAACCTCCAAGACTCTTAAGTAGAACTCTTCTGGGATTCAAACTGAGACTTCTAAACTGTGTCCTCAATAAGGGCAAAGCAAATCTCACTGTTCTGGTTTTAGAGCATCTAACAGGAGCATAAAACATGGACTCTTTAAGAGTAACTACCTAGTTTAAAGAAAACACCAGGAAATGGCTCTCTGCACAATTAGATTAAGGATACCCATAGAAGGGTATCTGGGATGTATAGAAAGGATCCTTGAAATCAACCTATCAGACTAAAACCACTAGCAGGAAACATCTTCTGGATGAGAAGTCCCAGAAGAACAAGATTCAGTGGAAGGGGAAGGCTTGATGCGCTACTATCTTGGGCCAACTGTGTAGTTGGAAGAATCAGGAGCTGAGGGCAATGACACACCTATAATTACAGCATGTGAAAGGCTGAGATGGAAGGCTTGAGCATTAAAGGTAGCCTGGGCTATACAACAAGATGAAGTAGAACGGGAGAGAAGGGGCAACAGGGGTAGGAAAGCAAGAAGAGGAGGTAAAGGGTGGAGGAGAGAAGGGGAAGAGGGAGGGAGGGAAAAAGAAAAGAAGGGAGGAAGGGAATAGCAGAGATGGGGAAAGGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGAGAGAGAAGATTAATTCTGGAAAGTCTTTACACTGAAGGAAAAATTTAGTCTTTACATGGCCAAAGGCCTTGTAAGTCCTGAATGGCATAATGGGATTTGGGTTTTAGAAAGATCACTACGACTGCTCCAAGCAAGATAAAGTAAATCTGAGTGAAGAACAGAGAGACCCACTAGTGGCTGTGTTATTAATCCCGATGTGAGATAACAGGAGTCCTTGCTGATGTCAGAGCTATGAGAAAGGTATGAATCTGAACAGGTGGCACAAGAGAGAAAACCAGACTTAGTTCATGTCTGGAATATATGAGGTATATATGGTATGAGGCAGAAACGATGAGAGAGGATATAAATACCAAGGGGACCATGTCTGAGACAATCAGTTGGCAACATCAAAGCAAAAGCCAGAAATAATTGTTGGGAGAATAATGAGGGAACATTCTAGTTTGCAAAAGGTAAGATGACAACAATTCAGGTAGACACAACATAGCCAATGAACAGTGACTAACGCATGGGTTGCTAGAGAGTGAATTGGTCCAAAAATTTAAGGTAATGGGCCTGAGTATGACTTGAGATAAAGGAGATGAAAATAATTAGGAGGGGGAAAGTAAGGCATCTTTTCGACCCTTTTCAAGCAGGAGTAGATAGCAAAACATGGTTCAGTTTGTGGGATTGACTCAAAACGGGCACGACATCTAGATCCTTCAAGATTAAGGAGATGAGAGTGGTCTGAAGCATTCATTGCCTCAGGACTCTCTTGAGCAGTGAAGGCCTTCCCTGTAAGACTGACTAGCCCAGAATTCAGTGGATGTGGAGGAGGAGGTGCTGAGTGGACACCAAGGACATAACTTGGAGCCATAGACTCAGAACAGTGTCTCTATTAGGGGAAAACAACCAAGCAACCTTAGCCATAGTGAATATCGCTTTTATCTGATAAATAATGTGAGTTCCCTTCCCAGTATTTCTAACCACAAATCTTTAGGAAGGCTTCAACTGAATCACTGTAAGTGCATGATAGTCTGATCTCTCACCATGAATCCTGAGTTCACACTGCATAACACCCCTGATAAAAGAACACTCAGCCCCCAATCATCTTTGAGAAAGAAAATCTTATCACAGGGTTAGGCAGCGTAGCTGGTAGTATTGGGGAATTTCTCTTTTCCTAGTTAACTAAAATTATCCTCTTTACAGTCTCTCTGTATTCATCCTCACACTTCCCCACAAGGTTTAGTTATGTGTTCTTTTTCATGGCTTCTCACATGATTGGCAGTAGTGCTCATGGAAGCTTTCTCCTTAACTAAGCCTGCTTCTCCCTAAGACACACATAACCACATCTCATTTGACTGGTTCTAATGTTCCAGTCACTCTGGTTCTTGTAGATTGGTACTCTGGCTGTTGTTCCTCTTCATGGGCAGAGCCAAGTTTTCAGTGTGTTACTGGGTACAGACTGATCAGGGGACAGCATGCAGAGGGGAAGCCAGGATGAACTTACACCGTGAGATCCATAAGGGTTCAAGGCATCATGGTTCCTCACTGTCTCCAATAGACACAATGCAAACTTGAGTGTTCAAAGCCAAGGGGAAATAGAGAGAGGGGTTAAGATGGCACTATCTGGTAAAGTTCTCAGCAAATGGTCAGTGGTGACTAGATTGGGAAACACAGAAGCAGTTCCTCCCTACCCCTAGTCCATGAAGTAGTATGGAGGCAAAGGTTAGCATAGCCATACTGCAGTTCGGAAGGAACCCGAGAGCTGAGCCAGGAGCCCATGTGAAAACCAGATGTCCACATCGAATGTAACAGCCTCCTGAATGGTTTTGTTTTCTTTCTCTCTGTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTGCAG
Seq C2 exon
GAGACTCCCTTAGCTATCACCAGGGACGTCCTTTCTCCACTGAGGACAGAGACAATGATGTTGCAGTCACCAACTGTGCCATGTCATACAAGGGTGCTTGGTGGTATAAGAACTGCCACCGGACCAACCTCAACGGGAAGTATGGGGAGTCCAGGCACAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002468:ENSRNOT00000003407:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(25.7=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(25.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]