BtaINT0151127 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011706 | TNR
Description
tenascin R [Source:HGNC Symbol;Acc:HGNC:11953]
Coordinates
chr16:58096878-58104000:-
Coord C1 exon
chr16:58103524-58104000
Coord A exon
chr16:58097142-58103523
Coord C2 exon
chr16:58096878-58097141
Length
6382 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
TGTGTATTGCCTCCTGGTAGTTG
3' ss Score
6.77
Exon sequences
Seq C1 exon
GACAACTGGACTATATCCCTCACTGCAGTGGCCATGGCAACTTTAGCCTGGAGTCCTGTGGCTGCATCTGCGATCAAGGCTGGTTTGGCAAGAACTGCTCGGAGCCCTACTGCCCCCTGGGCTGCTCCAGTCGGGGCGTGTGTGTGGACGGCCAGTGCGTCTGTGACAGCGAGTACAGCGGGGACGACTGCTCAGAACTCCGGTGCCCAACCGACTGCAGCTCCCGGGGGCTGTGCGTGGACGGGGAATGCGTCTGCGAAGAGGCCTACACGGGCGAGGACTGCAGCGAGCTGAGGTGCCCCGGGGACTGTTCAGGGAAGGGGATCTGTGCCAACGGTACCTGCCTGTGCCAGGAAGGCTACGTCGGTGAGGACTGCGGCCAGCGGCGGTGTCCAAATGCCTGCAGCGGCCGAGGACACTGCCAGGAGGGGCTGTGCCTCTGTGAAGAGGGCTTCCAGGGCCCTGACTGCTCAGCAG
Seq A exon
GTAGGGAGGGGGGCTCCGCGGGGCCGTTGGCAAGGGCGGTCCAGCCAGCTAGTAGGAGGCGGGAAGAGATATAGGAGGGAAAGTGAATTTAGGCCAAAGAATTGCCAAATGGGTCGTGCTCCTCTGCTTTCCGAGAGAGGTGATGTCTTGAGTCGATCACAGTTGACAACATGGGTTGAAGGGGAGAAGAGTGGAAACCAGAAAAGGTCAAGTTTGGGATGAAAGCTGAATCTTACCCCGAGGCTGGAACAAAGTCAATGGTAATAATGGAGACAGCATTTCACTGTCCTTAAGATGGAAGAAAGCGAAGAGTCAAGGGACCCCTTAGGCAAGGGACCCCTCTCTAACTCAGCGGACTTCCCAGAGCTCCACCCACTCTGAAATATTCCCCTTTCCTGTTGCCATATTCTGAGGACACTCCTTTCACAATGCTAGTTTATGAGATGGGGCATAGTCTGTGATAATCAGACTCACTGGGCACTCTGGTTATTTTGGGAGCTTCCATATGGCCAAGTTATTAATTTATGAAATGATCTAGAATCCACATGGATGAAAGTATTTACAGGTGAGGAATTATGTGTAAACAGGAATAAATTTCTAAAGCCCTCCATTAAGCAAGAACTCACAGTCTAACTAAAACGCTATGATTCAGTTTGTTCCAAAGGACATATAACAAACTGGAATCAACCCCACATGTGTCTACATCATGAAACCAACACAAGGGTGATGTCCCAAAAGGAGGCCCCAAGTCCATCAGTGAGAACATACCAATATTTTATTGGAGATCATTTTCTTTTGCCTAAAATCAGATTATTTTTCATTATCTCTCTGTGACTGCTCGTCATCTTCTAAATCAGTGACTGTCTCTGATAAATTTGTATTTTAAACAATACAGATTGAGTGATTGATCTTCATCCTTCTCATTCATAGTACAATCTGTAACAGTTGGCTCAGAGGGCTCATTGGGAAGATTTAAAATAAAAAAATAACAAGAAACAAACATTATTAAATCTTCTGATGAGTTGATTCTAGGAATTTTTCTGATCAGATTTCTGACCTCAGTTTAAGGGGGAGATTCTGGGAGGCCAGGTCTTTTATTCTTGAGCATCAGCAGTGATTCCCACCTACGTACCAGAGCAGTCAGACAAGTCTTCTGCACCTGCAACTTAAATTTCTTTTGAAAGATGAATGCAACAAGGTAAAGAAAAAAAAACAATTCACTGCTTAGGAAAAAAAATGTTTCTCCATTTTTCCCATAGTCAATGGTTTCATGCAGCCTCATACTTTTGTTTACTGAATATCTTTCTGAAAATATAGTCATTATACCAATTGTTCAGAAGGAAAATTCAAGCAGAAATTAAGCTGCATCATTTACAAACCCAAGGTCACTATTAATTGCTGGAAAGGGGACACTGAAGCATGATCCCAGCTCTCACTCACAGGACAAGGCTCTATGAGGCCCCATCAGAGGACGCTAAGTGTTCTTCTGGGCCCTTCTTTATGTGTGGCTGCTGTATAGTTCACATTCTTCTTAATAAAACTTGTCTCTGTTGGGTTGTACATACCTGTCATGTTCTTCCTGACCCTCCTTTTCCACCGGGATGGGTTCATTTGCAAATGGAACCTTAATCGGATCCAGAGTACAAACTGAGCTGGAGATGACCCTTCTGGTCACGTGGGGAAGACTCAGCAGCTGCTAGCGTAACTACAACTAGGCTGAACTCAATCCATGAGCCACATGTTACCTCCAACACGTTACCTCTGTGCCATTTGATTGCGGAAGACTTTTAGACAACCAGATAAATTACTTTATAGGTTCCCAAAGCACGTGAGGAGGGACAGTTGCATAATTTCCATCTGTTTCTATAGCAACCATGGAGCCACCACTCATTGCTGGAGGTGCTGCTCTCAATGCTTGTCTTTTAAACCAAATGCCATGGGTCTCTTCCAGAGAAGTATCTAGGTCATTATCTAAAGTGCTACTTCACCTGCTCTTGGTGAGAAGGCTCCAGGAGAGGGGCTGTTTACCGGCTGTTTGACATTTCTGGCCAGATGCGCACAAGCCAGTATTACTATTCGTCTCACCAACAGCAGGAAGGGGAGGAGAGAGGAGAGTGGGGAAGGTGAAACCGAGGAGAGCCATAACACACTTCCTGACTTTCCTTTCTCTCTGGCAAGGGCATGGAGAATGGAGGCCCATTGTGCGGACTTCATTCTGAGATCCCTTAGTCTGCTAGAGCTTGAATGCAATTGAATAGAGTTGACAAGACCACTCTACTTGACTCCCAGCCTTGATCTTTCTCACAGTGGGCCATGAGACCAGATCTCAACCTTTCTGCCTCTACTCTCTGGCCGGGTAAAGATAATAGAACAACAACAAAAAGAATATGAACACTTAAACCAGGTCTTAGAAAGAAGCTACTCGGGGCTTCTCATTTTACAAATTGAAAAAGCAGCAGTCCTGGGAGACAGAAAGATTTTTCCAGAGCCAGACAGCTAATTAATGGCAGAACAAGAATAAGAACTCTGGTCTCCTACCAACTTCTAGCACTCTTGAATCCTCCCTAGGATGCTAAGTAGAGTGGAATTGGAAAATAAAAATGGTAAAAGCCACATGCATAAAGAAATAGTCTTTTGATATGAAAGCTGAGCTCTGTCAGGTGATAAAAAAAATATTAAGTGTTGGAGACAGGATAGGGGTGCTTGTTCAACCATTTGTCCACATGTGCCCCCAGTGAAGGAGGTTAGTGTGGGAGGAGGCCAGTGAACTTGTCACAAGTCCCTGTGAAGAAGCAGGGTGAAAGAAACACCAGAGTTGGGGCTTGAAACAATCTAGAAAGCCATTCCTTGGACTTTGGTCAGACATGCAGAGATTCATCACCATCAGCCTCTGTGTTGGCCAGCACTGCAGCCAGTCCCAACTTTGGCACCCAACCTCACTCACTCCTCTGAGCAAGACACTTCATGGAACTAATTCCAACTGCTCTCACCACATATATGCAAAATTGATGCCAGATCTAAAAAGTAAACAGCATGGCATCTTTGCAGATAAGCAACTCCAGTTCCTCAAGCTACAGTTAATTCTTTTTAACTGCCTGCTCATCCATAAGTTTCCAAGTTGGAGCCCCAAATAAAGCAAGACTAAAAATACTTTGTGTGGTTTTCCTTTGGTCCAATGGTTAAGAATCTGCCTGCCAATGCAGGGGATACAGGTGAGATCCCTGCTCTGGGAAGATTCCATATGCCATGGGGCAACTAAGCCAGTGTGCCACAACTACTGAAGCCCATGTGCCCAGGGCCCATGCTCTGCAACAAGGGAAGCCACCGCAATGAGAAGCCTGCCCACTGCAACAAAGAGAAGCCCCCGTCCACAGCAACTAGAGAAAGCCTTCATGCAGCAAAGAAGAACCAGTGCAGCCAAAAATAAATAAATAAAAGAATATTTTGCATCAGCCCCACTAAATTCCTTGAATCAAGGCATACGGCTCTTTTATAGTTTGCTTTCTAGTTCAATATCATTTAATTTTATAAGAATTATTGACACCCAGTGTATACAGCATCTGCTAAATTATAGGGTGAGTGTTGATGGTCTCTTCTGCTGAGCCACTGCTCTCAAGAATGCTTCTTCCACCATGGACATTATTGCTTCTTTCTCATCAGACATGAAGGTTGTTTTTCCCACCACCCAGGCTCAGGTCTCAAGATTAAAAATTTGCCAAGCTAAGTTGTCAAGATGAGAAAATCCTTCTGCAGCCTTTTTAACTTTAAAATCCTCAAATGTGCTGTTTGGATCATTTTCTATTGTCATGATTAGCTTTATTTTCTGGAGAAAGGAACAAAAAATGAATTCACCGACTTGTTCTGAATGCCTAAGAATTGTTGGTGACGGAATTTGGAATGGCCATTTCTGTCACTATGACAGGAGGAGTCCCACATTGGAAACTTGGAATTAATGTGTTGAATCACAAAAGGCAGGCACTAGAGAATCCTTCTTAAAAGAGGTTTCTGACCACTAGGATAAGCACCAGTCTGGAATTTCCATCCTAAAAGACAGTCTGAATTATTTGCTGATGTAGTTTATTTCTGAGGCTCTGTACAAATGAAAGAAAGCATTTGGCACAATCCATAACCCATCCTACAAATTGTAGGGGGAAGAACATCCAGGGTAGAAAAGTGTAGACTGAATGTAGAAGACCTTCGCTTGATGATCAGTTCAGCTATGACCCAACTCCCTTACTTTGGGCAAGTCCTTTTGCCGGGGTCTGTTTCTGCATTTGTAAAGTTGAAATAATTATATCTTCCCAATCTACCTCATAAAGCTGCTATTAAAAGATTTTTTTTAAAAAATTCTAGTTAGATGGTGCTTCATAGACCAAGATGCTATGCAAATGTAAGTTGTATTGCACACTGACTTAGAGTTCCTAAAATCATTGCACCTGGGTTCAAATCCTAGCTTCTGTATTCGATTGTGTGACCCAGTTTTCTTCTCTGTAAAACAGGGGTAAAAATAATACTGATCCCATAGTGTTGGTGAGAGGATGAGATGAGAAAATCCATGTCAGAATGTTTAGCCTAGTGCTTGGTGCATAATAAATAATTAATATAATCATGCAAAATACTGTTGGTTCTATATATCAACTGTTCCTTCTTTGGTCCAAGAGTCATTCGGTATACATTATACAGGCTAACCCAAAGATCTTAGTGGAATTCATAGCTCAATCATGTCAGAGTTAGAAACAATACAAGCTTACAAGCTATTTGAAACTTTATTTAAATTTCGTTTACATACATCTAACTATATAAATTGTTAAAAATAATGTTAATTTTGTTTGTTTGTTTTGGTCAACATATGACTTCTTAAATCACAAGAAGTTCTGCTATCTAGACTGTTTCAAACCATGAATAGTTCCTGAAGCAAATGCCCAGTACTGCAAATATATGTTCCTAATGCCCATCATATGAGTCTTCATTTCTGCCTCTGATGAGGATTTGAGGTTGAGCAGCATAGAGAGCAGGCACTTTCCACTCACATGGCCCCGTGACTAGCAGTCCTCAGTCCTCTGCTTGTGTAAAGGGAAAAGAGTGAGAATTCTCAGAAAATTCAACACCAATGACAACACTTAAGCTAAACAAAGCCTCCACTACACATAACTTTATAAGTTAATTATGACTACTTAAATACTGGCCTGATCTTTGATTTCATCTACAGGCAGGTCCAATTACAGGCACACTGGTATTAACTTCCTAATTGGTCTTTAAGTTTCAGTTGTTTAATACCCCCACTACCACTGAATCTTCACTTCCCCAGGGAACCATACATGAAGGCTATTGAATAGTCTTTGAGAAGTAGAACAGGAATGCTCCTTTGTCATCATCCCCTATGTCAAGGTTAATAAAAATTTGTGTAACACAAGTTACATTTCCAGAGTAATCTGATAACAATTATGTATTAAACTACCAAAAATATTAGCTAACATATGCTGTTAAATATCTAACAACTAGCTCTCTGAGGGAAAAAATAACAAGCTCCACTTTGTAGCATTTGCCAGCTCCCATGGTATAAATACTCCCACCATAGCCAGTTTCAAAGTACCAGCATAAAGTCACTAAATGTTGAGCTGGGAACAGCTGTGCACTAGAATACAATCAAATAGTACTGGGTTGGCGAAAAAATTCATTTGGGTTGTCCACCCAGTTCATGGAAAACCCGAACGAAATTTTTGGCCAAATATTTCTTCCCCAGTGGCTCAGTGGTAAAGAACCCGCCTATAATGCAGAAGACATGGGTTCGATCCCTGGGTTAGGAAGATCTCCTGGAGGAGGAAACAGCAACCTGTTCCAGTATTGTTGCCTGGAAGTCCCATGGGCAGAGGAGCCTGGTTGGCTACAGTCTATGGGATCGCAAAAAGTCGGACACGACTTAGCAACTGAGCACGCATGCACTATTTCTACCAAAGAGATACAACACAGGTGAATTGCCTTAAGGGCACAGATAATAGTATAATGCAGCGAAGTCGTTTGCCAGTGATGAGTCTGGAGTATTTATTACTTTTGTTCTTAAGGTAATTATCTAATTCTAAGTTTAGACAATTTCATGTTTCACAATGACTATTTTAAAATGTCTTGCAAAATTTGACAACTAACTTTTCCAAGCCAGTAGGAGCAGGCTCCAGCCCACTACTAACTCAGGGCCCTGTAGAGATGAGAGTACTGAGCACAGAAAAGACAAGAACCTGCCTGCCAAGGGACTTCCTGATCACTCCAAGTCAGTGGGCTGAGAGCACACAGACAGGGCACGTGGGGTGAGAGGTGAGGAAGTTGAGTCCAGCGTGGGGAAGGCAGACCTCTGAGCTCATGCTATCTGTGTATTGCCTCCTGGTAG
Seq C2 exon
TTGCCCCTCCAGAGGACTTGCGAGTGGCTGGTATCAGCGACAGGTCCATTGAGCTGGAATGGGACGGGCCGATGGCAGTGACGGAATATGTGATCTCTTACCAGCCGACGGCCCTGGGGGGCCTCCAGCTCCAGCAGCGGGTGCCTGGAGATTGGAGTGGCGTCACCATCTCAGAGCTGGAGCCAGGTCTCACCTACAACATCAGCGTCTACGCTGTCATTAGCAACATCCTCAGCCTTCCCATCACTGCCAAGGTGGCCACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011706:ENSBTAT00000015545:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=16.9),PF079748=EGF_2=WD(100=16.9),PF079748=EGF_2=WD(100=16.9),PF079748=EGF_2=WD(100=16.9)
A:
NA
C2:
PF0004116=fn3=WD(100=87.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development