BtaINT0151358 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001444 | TNXB
Description
tenascin-X precursor [Source:RefSeq peptide;Acc:NP_777128]
Coordinates
chr23:27121046-27128858:-
Coord C1 exon
chr23:27128595-27128858
Coord A exon
chr23:27121415-27128594
Coord C2 exon
chr23:27121046-27121414
Length
7180 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
CTCGCCCTGCCTCTTCCCAGGGT
3' ss Score
9.2
Exon sequences
Seq C1 exon
TGATTGACGGCCCCCAGGACCTCCGCGTGGTGGCTGTGACACCAACCACACTGGAGCTCAACTGGCTGCGCCCCCAGGCTGAAGTGGACCGGTTTGTGGTGTCCTACGTCAGTGCTGGCAACCAGAGGGTGCGGCTGGAAGTGCCCTCTGAGGCAGACGGGACGCTGCTGACCGGCCTGATGCCAGGTGTAGAATACGTGGTGACCGTCACTGCCGAGCGGGGCCGGGCAGTAAGCTACCCAGCTTCCATCAGGGCCAACACAG
Seq A exon
GTACGGCTGGCCAAGGGCTGGGGAAGTTTCTGAGCCTAGGAGCCACTTCCTTGGGAAGCCGTGCACACAGGCTCCTCTGAATGCACTGCACAGGGTGTGTGGCAGTCCCAAAGTACCTTCTGGGGGCCTTCCTCTGTACCAGGGGCTCTGAGGAGACGGAGTTCTCAGGTGCCTGGAGTCCTGTAGGCAGGCGGTGGGTTGGAGTTTGGGAAGAGCAGCCTCATGGAGAGATGCAGTAAATAAAAGATGCTATCCGGCCCAACCAGATAGGGGTGGTTCTGATCTGACCTTGGGCACAGGGACTGCCCTGTGCTCCATCTCAGTGGTCAGGTCTCCTGGGACTGGAGCTGGGGGAGATTAGAGATCAAGGCGCCTGTTGACTTTAGAATTGGGGTTTGGGGGAGTTAGGTCTCAGCAGTAATTTTCCACTAACCCTCCAAGTCTCTTAACAGATGCCTGGATCTTTCTTTCCCTTTCCTGTGACAGAGGGACGCCCACCTCGCTGTCGCTCGCGTTCTCTCCTCCCACGCCCCTTTCTCTCCTTCAGACGCAGTGCCCCACCCGCTCATTTCTTCTTTCTAGGGCACCAACGGTGGCGGGCTTGGAGGGCGAAGCGGGAGGGCGTCCTGGGGCACTAACTTCTCTCGGTTCTCTTTGCAGGTGGGGCTGGGGCCCAGGAAAGAGGCCTCAGGCTCTGGTGGGAGGGACGCGGGCGGGGCTGCCGTGGGGGGAGTGCAGGGGTTGGTGATGGGGGGTGCTGCCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCAGCTTCAACATCTTGGACCACATTAAATCGATAACTTCTGGTCATCAAAGGACACCACTAAGGGCTTCCCTGGTGGCTCAGTAGTAAAGAATCCACCTGCCAATGCAGGAGACATGACTTCGCGCCCTGGTCCAGGAAGATCCCACATGCCTCAGAGCATCTAAGCTCCTGCATCACAACTACTGAGCCTGCACCCTAGAGCCCATGTTCTACAACAAGAGAAGCTACCGAAATGAGAAACGCACACACCACAACCGGAGAGTAGCCCCCACTCGCTGCAACCAGAGAAAAGCCCACACAGCAACGAAGACCCAGCACTCCCCCAAATAAATATAATTATAAAAATTATACAGTGAAGAGAAAAAGAAGGCAAGCCACAGAATGGGAGAAAATATGTGAGAAATGTCAGGATATATATAAATATATATATATATGTATGTATGTATTATATATGGTGGGGAGATTTGGAGACAGTGCTTAATAGTTGAGAGAGGATAAAAATCTAAAGAATTCCTTCAGAACAAAAACAAACAAAAGGCAGGTGCCAGTTTTTTAATTTGCAAAAAAAAAAAAAGTCTCTCTAGCAAAGAATATATCCAAAGGTCCAATAAATATATGAAAAATAAACATATGCATGTGTAGAACAAAACCAGTAATCAGGGAAATGAAAATTAAAACAAGCGGATGCCATCAAATATCCACCAGAATGGCTAAAACTAAAAGGGCTGTTGATGCTCAATATTGGCAAGAAAGTGAGGCTACTGGGACTCTCTTTTATTGCAAGCAGGGGCAGAAATTAGTGCAGCCACTTTGGAAAACTGATAGGCAGTTGCTACTAAGGCATACAGCCTATAACTTGGCAGTTACACTTCTTGGTAAATACCCAACAGAAACGACTGCACGTATCCTCCAAAAGACATGACTGCATGTATCCTCTAAAAGATGAGTACAGGAATGTTCATGGGATTTTTTTCATATGAGCCTGAACTGGAAGCACCTCAAGTGTCCATTAATAGTAGAATGGATAAATAAATTGGGGCATAGTCATACAATGGGATACTCCCCAGCAATGAAAAAACATCCTTCTGGGACTTGCTGGGTGATCCAGTGCTCAGGACTGGATTCAATGCCAGGCCCTGGGTTCAAGCCCTGGTAGGGGAAGATCTGCAAGCTGTGCAGTATAGCCAAAAAGCAAACAAACTCCCCACCCCCACCCCGCCAAAAAAAACACACAAAACATTCTTGTTACACACAGCAACATGGACAAAATTTGACACACATAATGCTAAGCAAAAGAAACAAGACACCAAAAAAGAACATTGTAAATGATGCTATTCATATGAAGTTCAAAAATAAACAGAACTAATAGAAGACAGGATAGAATTACTAGAAATATTTTGCACCTTTAACTGGGTGGTTAAACAAAGGTACGTATAATCAAAAATTAATTGAGCTATACACTTATGTGCATTTCACTATATGCACAAAATATACTTAATATACAAAAATATACCTTAAAAAAAATTCCCCAACCTCACACTCCCTCCAGCCACCACATATTTCTCTTCTCTACTTCATGGCCATAGTTGTCAAAAGAGTTATCTGGACTTGTTGTTCCTATCTCACATATCCCATGCATGTCTCAACCAGCTCCCATCTGACTTCTTTCAGTCTACCAAATAGCCCTCCCTGAGGTCTCCCAATGATCTGTGTCACAAAATCTAAAAGACATTTGTCTTCACCTTGATCTCTCTCAAAATCACTGGACACTGATGACCACGTCTTCCATTTTAGAGCATTCTGTATCTGTGCTGGCAATAAGGTAGATAGGAGAGATCACTGGGTCTTAACACTTAAAATGTGGCTAGAGGGACTGAAGCACCAAACTTTCTTTAGTATTTTTAACAGCTCCCCAGGGGATTGCAGTGTGTAGCCAGAACTGTGACCTACTTGGGGTAGTCATCCACTTAGGTACCTCATCCAGATCCAAGACTTTAATTTCCAAACTATATCCCAAAGTATAAACTATCTCCTCTTAACTCCAAGCAATATAGCTATCCTTCTATTTGGCATCTCCTCTTGGGCACCTCAGACTCAACACATCTAAAACAGAACTCAACGTTCATCCCTCCTGAACCCTATCCCTTTTCAGTGTTCTCTACTGCAGCTCATGGTCCCATAGTTACTCAGCTTCACAAGCCAGAAACCCAACAGCTCACTCAACACCACCATATTTCATCATATCAACCCATATTTTATTGTAAATGTCTTTTTAATTTGCGTATGTTTCTCCCTCTACGCATCATTATAGTCCAAGCTACTATCTACCTTTTGCTTAACAACTGTGATTGCCTCCTAGCCAGTCCCTCTGCTTCTATTCTTGCTTCTTAAAAATCTTGCAAAGGCAAATAGAATGTCCCTCGACCCCAAAAAACTTTTCAGTGGCTCCCTTCTGAATAGTCTTCAAATACTGAGAGACAGTCCTGCACCATCCGGCCCCTGCTGACCTCTCCCACCTCATCCCCCGTAAGACTTCCCTCCCTCTCTCCATTCCAGTCCCACCAGCCTTATGTCTCCCACATTCTTCCCAGCCCCAGACCTTTGTATCTGTGGTTCCCTCTATGGAATGTTCTTCCCTTTTCTCTTGGCTTCCTCATCATTCAGGTCTCAACCCCACATCTCCTCCTCAGGAAATCTTTCCTGTCCAGGTCAGCTCCCTTATCATATGATATTACAGGATCATGTAACTCCCATTTGCAGCATTTATAATAATTTATATTCACATATTTATTTGTGGGATTATTTTATTACTTTCTTGCCCACACTCAACATTGCTCGCTAGACTGTAAGGTCCATGGAGGCAGACATAGCACCTGGTTTTTTGTTTTGCTTTGGCTGCTATATCCTTACATCTGGCACATAGTAAGTGCTCAAAAAATATTTACTGACTATATAAATATTTAGTCAATTTACATAGTTCAAGTTAAGCCCAGGGCTAGCACAGGGCTGGAGCCAAGGACAGGACCAAGGTCAGGGCTAGGACCACGGACAGCTATCTGGGGCAGCTGTTCACCAGGGAGCAGGCCATGTGTAGATCCTGGCAGGACTGCATAGAACAAGCCCATTGGAAAACCATTTGGCACAACTGACCAAATCCACTAGAGCTGTGTGCAAGCCCTATGACCTGGCAGCTCCACTCTGAGGGGTCTACCCACTACAGCAGTACTTCTCGTAATAGCCGCAGACTGGGAACTACCCACATGTCTCACATGAGTAGAATGGATTAAATAACACGTGGTTTGTTCACACAGTGGAATATAATAAAGCAAAGAGAATAAAGTATAACTATATGCAATAACACGAATGGGTCTCGCTAATATAGGGTGGAGCAAAAGAAGTCACAAAGAAGAACTTGCTGAAACATTGTTTCATAAACATTCTGTTTGTGACATTTGAGTCTAGACCATGTGAACTGTCAATCAGTAGAGTTGCAAATCAGAAATGTGGCACTCTCGGGGGAATGGGGACCAAGAAAGGGCATGGTGGGGAAATTCTGGGGTGCTAAGAACGCCCTGTTTATTGATCTGAGTGCTGGTTACCCAGTTGTATTCGTGGAATCCACTGAGGCAAGAACTGGGGGGCACAGGGAGACGAGGATTAGAGAAGAAAGGTAGTGGGGTGATGGGAGGAACCAGGAGAGGGGGCCTCGGTAACAGAGATGCGTGAAGGGTTCAGGTGAAGGGTTAAGGAGCAGTGTTAGCAGGTGCCCAGTTCTTCCAGACCAGAGAGGCTGGAGAGGGAAGGAGAGTAGGGTGAGTGATGGGAATGCTGACTGAGGAGGAGGATTAGGGGCTGTGACCAGTGCCTCCCACAACACACACACATTTCCTGGCTTCCTATGCTTAAAATTCTCCTCTGAGTCTGAGAAAAAGGAGTTTCCAGGGCTACCAGCCATCACACTCCACCACCATCCCACCAGAGATGGAAGAGGAGCGGGCAACAGGAGCAGAGCATTTCCACACTGAGAGGCACCCTGCCCCACAAAGCCCAGCAGAAAGCCTGGCAAGCAGAGAGCTGCCCTTCCCTCAGCCCCTCTCTCAGCTTGGAGTGTAGCCCTGGGTGTGAACTGGGCTCTGACTTACCTTCAAATTCTGTTGCCCTGTGTCTAAGGTTGCGCACATCTCCAGGTGCACACACACACAAATACACATACACATACAAATGTACTCACATGTGCTTATCCACAAACACAAATATGAACACATTTCTTGTATCTGTCCATCCTAAGTCGCTTCAGTCCTGTCCAACTCTTTGCAACCCTATGTATTGTGGCCTGTCAGGCTCCTCTGTCTTTGGGATTCTCCAGGCAAGAATACTGGAGTTTACTGTCTGTTTTTGTTTTTCTGAATCTTTACAGAGACAACCTGTATTGCCAGGCACAGGCCACAAGGGTGCGCTCTGAGGTGAAAGGCGGCCCCTACGCCCACCCTACACCTCAGGCCTAGGCCCTGTGGCAGAGGCACTAGCTTAGGGGATTCTGTGGGTTCACAACCCGGCCTCAGGGCAGAGAGAGGCCCAAAAAGAAGCGGCCCACGCCATGTGGTAGATGGCAACTTAAATCAGCAAAGGAACTTACCTGGCCTGTCTTTAGCAGCTCCAAGACAAGCAGCTAGCTGTCCGCCCTGCCCGTCAGTGTCTCAGGGTTAACCGCCTTAATGGGGTCAGTCAGTCACTGCACCATCGTGAGGGTCTCAACAGCACCCTGCTTTCACAAAGCTTGACCTAGAAAAGGCCTTGGCTACGGGAATGCTGGGCAGAACATACATTCCGAGGACAGGGAGGCCTTAGGAGCTTTCCACAGCCCTGGGCAGTTCCTGGTGGGCCTGTGGTTACGTCCTCCCTTGTCCTCCTCCCGCAGCTTCCACGGCTCTGAGACAAGGTCTTCGCGCCGCCGCAGGGGATTGTGGGGCTTGAGGGGTGAGCCAACAGCCCAGAGGGCGCAAGGCGGGGCCCCTATCTGCTGAAGGGTGCTCAGCGTTCTTCTTGTGGCCACCGTGGAGGTTCCCAGGTGCTCTCTCCACAATAGACGGCGAGAGAAGACAGAGGCAGCCACGAAGAATAAGGATGCTTTGAAAGGGACTTGTTGGGGGACAGAAGAGGCGGTGCAGGCAGCCCACCCTCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCATCGGAGTCTATGAGTGCCTCCCACTGCCTCACTGCTCAGGCTGCCACTCCCCGACCTGTGCCCTTCTGCCTTCCAGCCCTCCCTGGTTCAGGCTCCGGGGGGTTCCCCACACCTTCCTGTGTCCCTGGAAACCCCCTCCACCCTCAGGGTCCTGGTGGATACCGGAGGCTGAGGCCTGGTCTTTGGAATTGTCTGATTTTCACTTGGGTTCCTAGGACACTTCTGCCAGGAATCCTGTTCTAGGCAATAGAAGGGTCATTTGATGGGAGGGACAGTGTCTGCAAAGATTCTCTGGAGCAGTTTGGGTGGGGTAGGGCGTGAAACCAGTGGTTTCCCACTCTGACTCACTGTGGTGAGGGTAGCTGACAACTGTGGTCAGTGGTTACTATTTTCCACACTTTGGCCCTAACCTCAAACAGACGCATCGGAACTGCTTGGGGGTGGCCTTGAAACCGTTAGGCAGCATGGGTAGGTGAGAGGTGAAGCCACTGCTTCTTGGGCTGGCTTTCCAGACCTCCTGGCTCAGTTCACACTTGTCTCTCCCACAGGAACGGCATCCTGGCTCAGGGAGGGGGCGCCCTGTGGCTGTTGGGGGGAGGGGTTATGGACCTCTTCTTCCCCACTAGGGCCCAGATGTCACCGGAGCTGGATGTCCACTCCTCTCTCTCTTCTGACTGCCCACTGTCTCTTGAGTCTTCCTTAACACCACCGTCTTCTTTCTTCCAGGCTTCTCACTGCAGCACTAATGGAAGCCAGGACCTCCACCCAGTGGGGAGGGTTTCCCATGGGAAGGGAGCTAGGAGCCTTGTGGGAGGAGGGATGGCAGACTTAGTTCTTCTATTTATGACCTGCAGGCCCGTCTGTGCAGGGCTATAGTGGATGTTTGGGACAATGAGGTGATCCAGGAGCGGCAAAGGGAAAGTCTGAAGACTCTTAGAAGCCAGAGAGCAGAACCTGGGAACTGCAGTCTCCTTTCTGGCTCTCATACTCGACTCTCCTGTTTTTCTCGCCCTGCCTCTTCCCAG
Seq C2 exon
GGTCCTCCCTCTCAGGCCTCTTGGGGGCCACTGATGAGCCTCCTCCCTCAGGCCCTTCAACGACTCAAGGGGCTCAGGCCCCTGTCCTGCAGCAGCGCCCCCAGGAGCTGGCCGAGTTGAGGGTGCTGGGCAAAGACAAGACAGGGCGCCTCCGAGTGGCCTGGACCGCCCAGCCTGACACCTTTACCCACTTCCAGCTGCGCCTACGGGTGCCCGAAGGGCCAGGGGCCCATGAGGAGCTACTGCCAGGGGATGTCCGTCAGGCTCTGGTGCCCTCACCCCCTCCCGAATCCCCCTACGAGCTGTCACTTCGTGGGATCCCTCCCAGTGGCGAGCCCTCTGCCCCTCTCATCTACCAAGGCATTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001444:ENSBTAT00000001893:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.191 A=NA C2=0.806
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=89.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]