MmuINT0163707 @ mm9
Intron Retention
Gene
ENSMUSG00000033327 | Tnxb
Description
tenascin XB [Source:MGI Symbol;Acc:MGI:1932137]
Coordinates
chr17:34815801-34819267:+
Coord C1 exon
chr17:34815801-34816064
Coord A exon
chr17:34816065-34818898
Coord C2 exon
chr17:34818899-34819267
Length
2834 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
CCCGCTCTGCTCCTTCCCAGGGT
3' ss Score
9.46
Exon sequences
Seq C1 exon
TGATCGATGGTCCTCAGGACCTCCGGGTGGTAGCTGTGACCCCGACCACACTGGATCTTAGCTGGCTGCGCCCCCAGGCTGAGGTGGACCGATTTGTGGTGTCCTATGTCAGTGCTGGAAACCAAAGGGTGCGACTGGAAGTTCCCCCTGAGGCAGACAGGACTCAGCTAACCGATCTGATGCCTGGTGTGGAGTATGTGGTGACTGTCACTGCAGAAAGAGGCCATGCAGTCAGCTACCCAGCTTCTATCAGGGCGAATACAG
Seq A exon
GTACGGTGGTCCTGGCATTCCAGATGTTAGGGAAGAGCCTGGTTTCTGAGACTGGGGGTCCTTTCCTTGGGCACCCAGGCTGGAGGGTCAGAGATATCTGTGGCGATCCCAGAACACCTGCTACAGCCTTGCTCTCTTCTAAAGTCAACAGGGAAACAGCCTTTAGGTTCTCAGAGTCCTATAGGAAGCTTGAAGGTTAGACTGTGGGAAGGACCGCCTCCTGGGAAGGAAGCAGTAGACAGAAGATGCTGTGATCCACCCAGGGGACGGCAGGTCTTATCCTAATTTAGTTACTAAGTGGACAGCTTGATGTGGGTACTAGAGTAAGTCATAGGTCATGGTCCTGCTGATTTTTGGACTGGGGTTGTCTGGGGTTGGGTCTCAGAGCGATCATTTCCTACCAACACTCAAGGTTTCTTAACAGACACTCAGATGGATCTTTCTTTGCTTTTCCTGGGACATGGCGACACCCTCGGCGTAGCTCACGTTTTCATCCCCCTTTTCTGTTCTCTCCATCAGATACACGCCCCACCTGCTGGCTTTTTTTTTTTCTTTCTAGGGTACCAACAGTGGCAGGCTTGGAAGGCAAAGGAGTGGGTGGGGCTTGGGGACGCTAATTTCTCTTTTTAGGTGGGACTGGGGCTCAGAGAAGAAGCCTCATCCCCAGTTGGGGGAGCAGAGCGGTGCGGTGGGGGAACCTGACACTGACCCACTGTCCCCTCCCCCTTTCTCGCTTGGCAGCACCAGGCCACTACAGTTACCCGGAGGTGCGCCCCCCAGCCCCGCCCCCCAACCCCCGTCCCCGGCCTCGATGGCCCTCCCGGCCCTTGCCGTCCCCAGAGACGGACGAGAAGGAGTGGCATCTCCGGCCGAGACTGCCCCAGCCCCCTCGACGGCCGTGGGGTAACCTGACGACTGAACTGAGCCGCTTCCGCGGCACAGTACAGGACCTGGAGCATCACTTGCGAACCCACGGCTATCCACTGCGCGCCAACCAGACTTACGCATCGGTGGCGCGCTACATCCATGAGTTCTTGAAGCGTCATCAAACAGCGGGTGCCCCAGCATCCCAGCCACGTCACCCTCACCCCACCACTAGTCCCACCCAGAACACCAGGAAGCGGGACTCGGAGCAGGGTGCTGTGGGCCCAGCATCCGATGGTGCACACCCGGTGACTACAGCGCGCCACCCGAAACCGGAGGTGCTGGGCAGTGCAGCCGACGGCTCACTGATTGTGTCCCTGGACGGGCTCCGTGGTCAGTTCGAGCGCGTGGTGTTGCGCTGGCGGCCACTGCTACCAGCCAAGGGCCCCAGCGGGGAGCTGACTGTGGATGGTTCTGAACGCACTGTCCGCTTGCCGAACCTCAGGCCCGGGACTACTTACCACGTGGAGGTCCATGGGGTACGGGCAGGACAGACTTCCAAGTCCTACGCCTTCATCACCACCACCACCACCACCACCACAGGTAGTGTGGGCTGGGGCCCTGGACTGCCCACCCCCTGTCTAGTGTCACCTGCCTTCAGGATTGTACTTGCTTATTCCTGCTACCTCACTGCTTAGGCCTCCGCCCCTCACCATGCCCCCCCTCCCCCACCCCCCAGTCTACCTGGCCCAGGCTGCAGGATACTTCCACAGACAGCTGCTCTCCACTGTCACAAAAACCTACCCCATCCCAGGGTCCTGGCATCCTCCTGAGGATAATCAAAGCCAAATAGACCCAGTTTGTGGAGTTCCCTGGCTCACACGTGGGTTCCCAAGCTCTTTGGCAGCGCCTGCTATTGCCAGGCAAGTTCAACATCTTGACATAGCGACACAATATTGTCTGCAAAATTCATACTCAAGTACCTTGCACTTGAGTTTGTTTTTTTTTTTTTTTCCCTAATTGGGAAAGGGGAAAGAAAAACAAAACAACCTAAAACCACAAAAAGCACCATCTCACAATGTTTAGAGCAAGTTAGAGTTTTGTGTAAGGCTGCACTCAGAGCTGACCCGCAGTTAGGAAGCTTCCCGTGCACACAACAGAAGGCCTCGCGGTGGCGTGTGCCGTTTCAGTGGATGGGGTTGAAACCAGAGATTCCCACTCTGACTCACTGCGGCGAGGGTGCCTGATGCCTGTGGTCTGTGGTTATTTCTCACAAGTTGGCTTTGACCTTGACGGGATGCAGCAGAACGGCTTGAGGGGTGGCCTTGAAAGCCATCGGGGCCGCGTGTGAATGGTGGGAGGTGAAACCACGGGGTTTCCTGAACCGCTTTCCCAGACTTGGCTCCCCCTCCAGCTGGTTTCTCCCACAGGACTGATGCCTGGCCCAGGGACAGGGTGCTTTGTGGCTGCAGGGTCGGGGTGGACCTGTTCTTCCTCCTTAGGGCCCAGATGCCACAGGAATTGGACCTCCGTCCACCCTCGCACCCTGTTTGCGCTCCACCCTTTCCTTCCTAACAACACAACCCCTCCTTTCTTGCAGGCTCTCACTACAACACTAATGGAAGGTGGAGAGACACCAGTGGGGGTGGGGGTGGGGGTGGCGGCACGGACATTTGGAGCTTGAGGTCGGGGAAGCCTCTAGTAGGGAGGGAATAGCAGGTTTTATCTGTCACTGCCTGGCTGCTCCGGAATGAGCTCCACGGGGAGGACTCCATTTGGAGGACTCGGCCAAATATGGGAGAAGAAGGCTGAGGAGCAGCTTGGGAGAGGGGAGGGAAGCCTTCTAGCTCTCAGAGGCTGGGGGGCACACTTGGGGACTCCGGGTGCCCTTCCTAATCTCATGCTCCACTCTCCTGTTTTTTGTTTTGTTTTGTTTTGTTTTTTTCCTTACCCGCTCTGCTCCTTCCCAG
Seq C2 exon
GGTCCTTACCCTCTGGCCTCTTGGAGGCTACTGATGAGCCTCCTCCCTCGGGCCCCTCTACAACCCAAGGGGCCCAGGCCCCTATCCTGATCCTGGAGCACCACCCGCTGGGAGAGTTGAAGGTGCTGGGCAGAGACAAGGCAGGGCGCCTCAGTGTGGCCTGGACTGCCCAGCCTGACAGCTTTGCCCACTTCCAGCTGCGTATGCAGGTGGCCGAGGGGCCCTGGGCTCACGAAGAACTGCTACCAGGAGACGTCCAGCAGGCTCTGGTGCCCCCACCCCCTCCCGGAGCCCCCTACAAGCTATTCCTCCATGGGATCACCCCTGGGGGCAAGATCTCTGTTCCTATCACCTACCAAGGCATTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033327-Tnxb:NM_031176:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.296 A=NA C2=0.371
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=89.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: