BtaINT0151630 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020305 | TOR1A
Description
Bos taurus torsin family 1, member A (torsin A) (TOR1A), mRNA. [Source:RefSeq mRNA;Acc:NM_001099058]
Coordinates
chr11:100223268-100226305:-
Coord C1 exon
chr11:100226040-100226305
Coord A exon
chr11:100223444-100226039
Coord C2 exon
chr11:100223268-100223443
Length
2596 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGG
5' ss Score
2.76
3' ss Seq
GCTTCCCCCTTGTCACTCAGGAT
3' ss Score
7.03
Exon sequences
Seq C1 exon
CGCTGCAGAAGGATCTCGACAGCAAGCTCTTTGGACAGCATCTTGCAAAGAAAGTCATCTTAAATGCTTTGTCCGGCTTCATCAGCAACCCGAAGCCCAAGAAACCTCTCACCCTCTCCCTGCACGGGTGGACAGGCACTGGCAAAAATTTTGTCAGCAAAATCATCGCGGAGAATATCTACGAGGGTGGTCTGAACAGTGACTATGTCCACCTGTTTGTGGCCACGCTGCACTTCCCACACATCTCGAACATCACCCTGTATAAG
Seq A exon
GCAAGGGTCGAATTTGGGAATCCTTCAGGGACGATGCTGGCTTTGGGGTTTCTTTGTTGGGGGGTGGGATTTGGATGTTCTGTGTTGAAAGGAGTGAGCCCTGAAAACAGCCACACGTGGCCGTTTCCCTTTAAAAAGTGTGGAAATTACAGAGAGTTGGAGATGACAGAAGCAATGACAACGTCAAAGCTGGTTTCTGAAAACAGGCTGCATGTGGTACTTAGTAAGTGGTGTGGTAGGATTTTACAGATGGACGTAATCAAATCCGGGTTAAAGCTCTTCAAATCTAACATGTTTTATAAAAGGGGAAACATTTCTAGGGAGGCCTAAGTTTGCTTTTATACTTGAACTCACTGATTTAACAGCCTGGCTTCCAGGGCAGACACATCTGAATTTCAGCCCCAGGCTCCCACTTAGCTGTGTAACGTTGGGAGAGTCACCTGACTTCTCTTGAGACTCAGGTTCTTCATCTGTCAAATGACAGTTGTGAGAATTTCTTTTTAAAAAAAATTTTGACCATGCAACGTAGCATGTTGGGTCTTCATTCCCTGATCAGGGTTTGAACCCATGCCACCCCCTGCAGTGGAAGCTGGGAGTCTTAACCATTGTAAAACCAGGGAAGTCTGAGAATTTCTTGAGCTCTTAAACCTGTCAAGTATGTAACATGACGCTCAGCACATGAGCGTTCAAATCATTGGTAACTATTGCCTTTTTTTTGTCTCACCTGTGTGAACACATTTTTCCCTTCAGCTTGGATGAGCATCAGGGTCACGGACCGCCCAGGAGTTCCTGGGATGTGAGGCTTTCGCTGCTACAACTGGGAAAGTTCCAGGCAAATAGGGACGAGTTGCTCTTCCTAGTTAGCATTCCATCTTCACTGTTCAATAGCTGTGTGACTGAGCAAGTTACGTAACCTCCCTGCACCTCAGTTTCCTGGTCTGTGAAATAGGAAATGCAGTAGTTAACTGCTTTGACGGGTTTTGGAACGTCACAATAAAACGGGTGAACCGTGCTTAGAACAGGGTCTTGCCTGTAGTGAGTGCTCCATGTACGTTCTCTGTTGTCTGTAAGAGGGAGGAACAGAACGGAAGGCCTTGGCGGCTAGAGCCCGCCAGACCTGAGGGAATTCTCGTTTAAACAGTGACTCACTTTGTGGCCTTGTTCAAGTCACTCCAGCTCTCCTGAGGTTCTGCTGTAAATAGAGGTCAGTTCATATCTCCAGAGCAGAGATGGGCTTCCCAGGCGGTGCTAGTGGTGAAGAACCCACCTGCCAGCGCAGGAGATCTGAGAGACACGGGCTCGATCCCTGGGTTGGGAAGATGCCCTGGAGGAGGGCGTGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGAACAGGGGAGTTGATCGGCTACAGTTCATGGGGTCGCAAGAGTCAGACACGACTGAAGTGACGTTGCACGAACAGAGCAAAGTTACTGCTTTGGTTAATAGGCACCCATGGAACACTGTAGCCGTAGTCTGAGTAGCCAAGCAAAACTCCAGATCATAAGAAGTCAAGACCTATATCGTAACTTCTAGAATTTTCCTCGGAAACTAATAGCTAACTCTTCTTCTTACCTTGCGTCGTGCTTGGTTGCGTCAGTTGTGTCTGACTCTTCGCAACCTCGTGGACTGTAGCCTGCTAGGCTCCTCTGTCCATGGAATTCTTGACGCAAGAATATTGGACTGCATTGCTGTGTCCTCCTTCAGGGGATCTTCCTGACCCAGAGATCAAACTCAGGTCTCCTGTGTCTCCTGCATTGCAGGCGGATTCTTTTACCTACTGAGCCACCTGGGAAGCCCTCTCCTTATCGTAGGGGGAAACATCTAGGAAAGCATTGTGCAAAACCATAGCTCAAATTTCTGATGGAAAAGGTCCTCTCTCCTTCTCATCTTGATTGCTTAATATAAGAAGTACCTACATAATGTTTGTAGGGAATGTTCCATTTAAGCAGATTTATTCCAGCAGTCTCCAGGCACTGTTTCAGAAACTCAGGAATGTTGCCTCCCCACACTCATCCTCGAGCATGTGTGCTCTTGAGGTCTCCTTACCCCTCTCGAAACCTTAGAGCCCTTCTCCAGGCTCTTCCAAGGACTTAATCAGGGAAGAGGTTGCTCGGTCTCTGCTTTCTCCCAAGAAGGCTGGTGTCCACAGGATACATTTTAACATGTTCGTTTTGATGACAGAGGACTAGCAATGTAGCATCCATGTGACACGTCACAGAATTATAATCAGGGTGTGGGGCCGTGGAATCAGGCAGGGTGGGGTTCAGGTCTTCACTCTGTTACAGCCCAATTGTGTAACATTGGGAAAATTTTGGAACCTGAGTTGATTATGCTCTTTGTGCCTCGGTCTTCTCATCTGTAAAATGGGCATGATGATGCCCACTGTGTGGGGCTGTGGTGAGGAACAGAAGAGCTCGTGTGAAGTGCTCCGCACAGCAGGAAGCACACAGTGAGCTCTTGTAAATGCAGCCTTTGTAGACCCCAGGTGTGGTGTTAACAGTGCTCCCCCCGCTGTGTCAGTCGCACTTCTGAGGATCTCTGTTGGCTTCCCCCTTGTCACTCAG
Seq C2 exon
GATCAGTTACAGTCGTGGATTCGCGGCAACGTGAGTGCCTGTGCGAGGTCCATCTTCATATTTGATGAAATGGACAAGATGCACGCCGGCCTCATAGACGCCATCAAGCCTTACCTAGACTATTACGACAACCTGGATGGGGTCTCCTATCAGAAAGCCATCTTCATATTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020305:ENSBTAT00000027059:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=FE(69.8=100)
A:
NA
C2:
PF063096=Torsin=PD(15.9=33.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development