HsaINT0171005 @ hg19
Intron Retention
Gene
ENSG00000136827 | TOR1A
Description
torsin family 1, member A (torsin A) [Source:HGNC Symbol;Acc:3098]
Coordinates
chr9:132581024-132585125:-
Coord C1 exon
chr9:132584860-132585125
Coord A exon
chr9:132581200-132584859
Coord C2 exon
chr9:132581024-132581199
Length
3660 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGG
5' ss Score
2.76
3' ss Seq
TTTTTCCCCTTTTAATTCAGGAT
3' ss Score
9.84
Exon sequences
Seq C1 exon
CACTGCAGAAGGATCTGGACGACAACCTCTTTGGACAGCATCTTGCAAAGAAAATCATCTTAAATGCCGTGTTTGGTTTCATAAACAACCCAAAGCCCAAGAAACCTCTCACGCTCTCCCTGCACGGGTGGACAGGCACCGGCAAAAATTTCGTCAGCAAGATCATCGCAGAGAATATTTACGAGGGTGGTCTGAACAGTGACTATGTCCACCTGTTTGTGGCCACATTGCACTTTCCACATGCTTCAAACATCACCTTGTACAAG
Seq A exon
GCAAGGATGGAAGTTTGGAATCCCTTCCTGGATGTCATCGGGTTTGGGGTCTCTTTGTTGTGGGATGAGATTTGGGAGTTCTATGTTGAAATGAGTGAGCCCGGAAAACGGTTCATGTCTCAGTTCCCCTTGGAAAGGTGTAGAAGTTAAGAGTTTGAGATGCGTGGAGCAGTTAATACCATCAAAGCTTTGTGGTGGGTTCTGAAAATCGGTCCAGTGAGTATGTAGGGTCATGGGATTTTAGAGGTGGACATGATCAAATCCATCTTAGAGATCAACACATCTCACTCATTTTTTTATTTTTTTCTTTATTTTGAGACGGAGTTTCACTCTTCTTACCCGGGCTGGAGTGCAATGGCATGATCTCAGCTCACTGCAACCTCTGCCTCCCGGTTGAAGCAATTATCCTGCCTCAGCCTCCCGGGTAGCTGGGATTACAGGGTCCTGCCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTTGCCAACTTGGCCAGGCTGGTCTCGAACTCCTGATCTCAGGTGATGTGCCTGCCTCAGCTTCCCGAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCTGGCCACATCTCACTCATTTTGTGAAAGAGGAAACATGTAGAGTCCTAAGTTTGTTGAACCTACTGTTGTAAACTGCCTTTTTTTTTTTTTCTTTGAGTCAGGGTCTCACTCTGTTGTCCAGGCTGGAGTGCAGTGACGCCATCTCAGCTCACTACAGCCTCCACCTTCCCGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGTGACTACAGGCATGTGCCACCACAGCCGGCTAATTTTTGTATTTCTAGTAGAGATGGGGTTTCCTCACATTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCTGCCTACCTCAGCCTCCCAGAGTGCTAGGATTACAGGCGTGAGCCACCTTGCCCAGCCGCAAACAGCTTTTATGGTTGAACTCACTGATGAGCAGCTTGGGCTTTGGCAGCAGACACATCTGGATTTGAGTCCTAACACTCTCCCAGCTCCGTAGTCTTAGGAAAGTTGCCTGACCTGAGACTCAGATTCTGACTTACAAAGTGTTGCTTGTAACAATCCAGGGAGCTCTGTCTGTCAAGTGCATAACATGTACCTGGTGCATGTTACAAATAAATGTTAACTGTTGCCTTTTAGATCCTTGTAGCAGACCTGCAAGATGGGCAAAACAGTCAATTATTTATTTATTTATTTTTGAGACTGAGTTTCATTCTTGTCACCCAGGCTGGAGTGCAGTAGCACCATCTGGATCTTGATCTCGGCTCACCGCAAACTCTGCCTCCCGGATTCAAGTGATTCTGCTGCCTCAGCCTCCCAAGTAGCTGGTATTACAGGCACCTGCCACCACACCCAGCTAATTTTTGTATTTTTAATAGAGACAGGGTTTCACCTTGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGGTCATCCAGCTGTCTCTACTTCCCAAAGTGCTGAAATTACAGGTATGAGCCACCATGCCTGGCCTCAATCAGTTATTTATCCCTGACTGTATCTATGGAAAAATGTGAACACATTTTTCCCTTCTGTCTGGGTGAGCGTGTGGGTCACCCACTGTCCAGCGGTTCTGTACTAAAATGCGAATGTTCCACGGGTGTGGTGGCTCATGCCTATAATTCTAGCACTACGGGAAGCCAAAACCGGCTGATCCCTTGAGCTCAAGAGTTCCAGACCAGCCTGGGGAACATGGTGAAACCCCATCTCTACTAAAAAAATACAAAAAAATTAGTCAGGCATGGTGGCATGCACCTGTAGTCCCAGCTACTTAGGGGGCTGAGGCAGAAGGATGGCTTGAACCTGGGAGGTCGAGGCTGCAGTGAGCAGACAGCCACTGCAGTCCAGCCTGGGTGACGGAGTGAGACCCTGTCCCAAACAAACAAGAACCATTCTAGACGAATCAGGATAAGTTGATCATCTTAGAATTGAGGCTTCACTAACAATAACTGTGACTTTGGGCAAAGTTACTTCACTTGTCTGTGCCTCAGTTTTCTCATTTGTAAAAGAAGGAGCACAATGGTAACTACCGTGATGGGTTTTGGGAGGTCACAGTAAAATGTTCTATGAACAGACCAGGTGTGGTGGCTCGCGCCTGTAATCCCAGCACTTTGGGAGGCCGAAGCGGGTGGATCACAAGGTCAAGAGTTCAAGACCAGCCTGGCCAAGATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGCAGGTGCCTGTAGTCTCAGCTACTCAGGGGGCTGAGGCAAGGGAATCGCTTGAATCTGGGAGGCAGAGGTTGCAGTGAGCTGAGATCATGTCATTGCACTCCAGTCTGGGTAACAGAGCGAGACTGTCAAAAAAAAAAAGTTATATGAACAGTGCTTAGAATATTGTTGTTCCCATAGTGAACACTCAGTGCATGTTCCCTGTTATTGCATATAAGTTTGGTCACCAGAGTGAGAAACCTTGGCTGCTGGAGCCTAACAGGTCTGAGTGAATCCTTGTTTATTTTATTTATTTATTTTATTTTATTTTATTTATTTATTATTATTATTATTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTCTCCCAGGCTGGAGTGCTGGAGTGCAGTGGGGTGATCTTAGCTCACTGCAACCTCCACCTCCCAGGTTCCAGCGATTCTCAAGCCTCAGCCTCCCAAGTACCTGGGATTACAGGCGCCTGCCACTATGCCTGGCTAATTTTTGTATTTTTTTTTTTAATGGAGTCTTGCTCTGTCGCCACGCTGGAGTGCAATGGCTTGATCTTGGCTCACCGCAACCTCCGCCTCCCAGGTTCATGCAATTCTACCTCAGCCTCCTGAGTAGCTGGGACTATAAGCACCTGCCACCATACCCAGCTAATTTTTTTGTATTTTTTTTAGTAGAGACCAGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCACTTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAACCACCATGCCTGGCCCTAATTTTTGTATTTTAATAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACCCCTGACCTCAACTTATCCGTCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCATGCCCGACCCCACCCCCTTTTTAAATAAAAATCAGTATCCTCATGACATCCCACATTGCCCCTTTGATGACAAAAGAGCAGCATCTCTGACAGCATCCGTGTGGCATCTCGCAGTGCGGGAACCGTAACCAAAGTATCGGGCTTTGGAGTGAGACAGGACTGGGTTCAGGTCCCAGCTCTGCCACATATAGTCTTGGGCAAGTGGAGTAAGCGCTCTCTGTGCCTCAGTTCCCTCATCTGTAAAATGAGAACGATAGTGCCCACTCCATGGGGTTGGTAGGAACAAAGAAGATTTTGGGCATGTAAAGTTCTTAGTGCCGAGTGCACAGTGGTCTGTAAGTGAAGCTGCGGTTCTTAGTGGTAGAAGGAGCTGATTGATGGCCCTGGCTGAGAACTTTGTGTTCGCTTTTTCCCCTTTTAATTCAG
Seq C2 exon
GATCAGTTACAGTTGTGGATTCGAGGCAACGTGAGTGCCTGTGCGAGGTCCATCTTCATATTTGATGAAATGGATAAGATGCATGCAGGCCTCATAGATGCCATCAAGCCTTTCCTCGACTATTATGACCTGGTGGATGGGGTCTCCTACCAGAAAGCCATGTTCATATTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136827-TOR1A:NM_000113:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=FE(69.8=100)
A:
NA
C2:
PF063096=Torsin=PD(15.9=33.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)