RnoINT0154641 @ rn6
Intron Retention
Gene
ENSRNOG00000006435 | Tor1b
Description
torsin family 1, member B [Source:RGD Symbol;Acc:1308431]
Coordinates
chr3:9793610-9795974:+
Coord C1 exon
chr3:9793610-9793875
Coord A exon
chr3:9793876-9795798
Coord C2 exon
chr3:9795799-9795974
Length
1923 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGG
5' ss Score
3.33
3' ss Seq
TCTCTTTGAGGTTGGTCTAGGAC
3' ss Score
1.89
Exon sequences
Seq C1 exon
CCCTCAAGCTGGACTTGGAAGAGAAGCTGTTCGGACAGCACCTTGCCACCGAAGTGATTCTCAAGGCATTGACTGGCTTCAGGAACAACAAAAATCCCAAGAAACCACTGACTCTATCCTTGCACGGCTGGGCTGGCACGGGCAAGAATTTTGTCAGCCAGATTGTGGCTGAAAACCTTTATCCAAAAGGCCTGAAGAGTAACTTTGTCCACCTGTTCGTCTCTACTCTGCACTTCCCTCATGAGCAGAAGATAAAACTGTACCAG
Seq A exon
GCAAGGAAACCTACTGCTCTCTGATCGGATGCCTGGGGCACCTGCTCGGTAGCTCTGATCTCTCTGCTTTGTTTTGCTTTCTGCTATGTGTTTGTTGACTGAGTTTTACGGTGTAGGTCTGGCAGGCCTGGAACTCACAGAAATCCACCTGCATCTGCCTTCTGGGGCTGGGATTCAATGCCTAGCCTTTCTTTATGCTTTTCCACGGCTTTTTTTTTTTTTTTTTAAAGATTTATTTTATTTATTATATATATAAGTACACTGTAGCTGTCTTCAGATACACCAGAAGGGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCATGACCTCTGGAAGAGCAGTCGGGTGCTCTTAACCGCTGAGCCATCTCTCCAGCTCTTTATGCTTTTCGAGTCGAGAACTTATTGTGTAGCCCAGGCTGGCTTTGGTGTTAGGGATCCAACTTTCTGAGGGCTGAGATTAGCAGGCATCTATCTACCAATCTGCCCATCTTATGGTATGTGGGGGAGAGAGTGGTCTTAGGGTCTAATGCAGTCCCAGTTGGCATCAAATTCACTAAATAGCAGAGGCTAGCCTCGAACTTCTGATCCTCTCACCTTCACCTTCCAAGTGCTGGGATCCAGTGAGGTAGGGGATATTATAAGCATTTAAAGATGGAGTCTAGCAGCGGGCGGTGGGGGTCGGGGGAGGGTTCAGGGGAGGGAACTGGAATGAGAGAAAGTGGGCAAGAGAGGCAAGGTGACTCATCCCTTACAGCCCGACCTCCTCATCTCTTGTCTCCAGGCCTCTGTCTTAGGCACCCATAAAGGGATTTACATTCCCAGCAGCAGGGCACAGGGTGTCAGGTAGGGTAGTCTTAAATAGTTTGCTTGGGCATGGCCTTGTCTAAAACTTGCTATCTCTGCGGCAGCCACGGCTTTGCCCATGTCTCACAGAAGCGTCTCACAGAAGCGAAGTTCCAGACTGTTTCTCCCTCTTAGATCTCTGCACATTTCATCTGCCCGTTCTGACTTAAATGACTGTCTTGCTTGTTGGTACTCGGCCTCCTGGTGGACGGAGCTAGCAAACAGAAACCCAGTTGAAGAAGGAAATGAAACTGAGTGTCTGTTGTAAGGCAGGGAGGAGTGCCAGAAGGAAGGACGGGCTCATTTGATGGTGCCGAGGCAGGGCTGTGCCAAGCTACAGTGCCCACCACGAAGTAATGTCCATGTTTTCCAGATTTTAGTACAGATGTCTTGAAATACAGTATTTGCAGTGAGTGGTCTGTAACCGAGGCCTTTCCCATGTAGGGGATGAGAGGTTGTTGCTTGAGTGTTTCTATTGAACAAGGGGCCTGGGGATGTAGCTCAGGCTTTCCATGCCAGCCGGGGCAGCATCTTTATCTACCGCGTCAGTCCAGAGCCTTGGTCCCCTGCATTGTGCAGATCTGAATTCAGTTGTCATTTCTGTGTGCCTGGTGTCTGGGTTTCTTTTCCTGTTGCTGTGATACCTTTACAGAGGCTACTCAGGGGCTCTCCTTCTGCCTTGTTTGGGGCTTCGGTACTGCATGCTGTGGGTGAGTTGGCCCACCAGCACCTGGGCAGTCCCCTGCTTCCCATTGTGCTGCAGGAAGGCTAAGGTTGCAGAGGCATGCACAGGCCATGCTATGGGCACGTATGCGGAGACCAGCGGGTGGCTTTTGGAAGTAGGTTCTCTCCTTTGGCCATTTGGGTCCTAGGGAGTGAACTCAAATGGCCAGGCTTCAATGGCTAGTGCCATTCCACTTGTGATAAAGTTTGGGAAAGTGTCCGTCTGCTGTGTATGCAGTATGGTGGCTTCCCCAGGCCCAGGCAGCTTCTCCCCTTCATCCTCTGGAACGTCTTCTGAGCCTCGTCTCTCTTTGAGGTTGGTCTAG
Seq C2 exon
GACCAGCTCCAGAAGTGGATCCGAGGCAACGTGAGCGCGTGCGGCAGCTCCGTTTTCATCTTTGACGAGATGGATAAGTTGCATCCTGGAATCATTGATGCAATCAAGCCCTTCCTGGACTATTATGAGCAGGTGGATGGGATTTCCTACCGCAAAGCCATCTTCATCTTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006435:ENSRNOT00000066618:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=FE(69.8=100)
A:
NA
C2:
PF063096=Torsin=PD(15.9=33.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATTGACTGGCTTCAGGAA
R:
GCGGTAGGAAATCCCATCCAC
Band lengths:
355-2278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]