RnoALTD0031577-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000006435 | Tor1b
Description
torsin family 1, member B [Source:RGD Symbol;Acc:1308431]
Coordinates
chr3:9793610-9795974:+
Coord C1 exon
chr3:9793610-9793875
Coord A exon
chr3:9793876-9793923
Coord C2 exon
chr3:9795799-9795974
Length
48 bp
Sequences
Splice sites
5' ss Seq
TCGGTAGCT
5' ss Score
2.04
3' ss Seq
TCTCTTTGAGGTTGGTCTAGGAC
3' ss Score
1.89
Exon sequences
Seq C1 exon
CCCTCAAGCTGGACTTGGAAGAGAAGCTGTTCGGACAGCACCTTGCCACCGAAGTGATTCTCAAGGCATTGACTGGCTTCAGGAACAACAAAAATCCCAAGAAACCACTGACTCTATCCTTGCACGGCTGGGCTGGCACGGGCAAGAATTTTGTCAGCCAGATTGTGGCTGAAAACCTTTATCCAAAAGGCCTGAAGAGTAACTTTGTCCACCTGTTCGTCTCTACTCTGCACTTCCCTCATGAGCAGAAGATAAAACTGTACCAG
Seq A exon
GCAAGGAAACCTACTGCTCTCTGATCGGATGCCTGGGGCACCTGCTCG
Seq C2 exon
GACCAGCTCCAGAAGTGGATCCGAGGCAACGTGAGCGCGTGCGGCAGCTCCGTTTTCATCTTTGACGAGATGGATAAGTTGCATCCTGGAATCATTGATGCAATCAAGCCCTTCCTGGACTATTATGAGCAGGTGGATGGGATTTCCTACCGCAAAGCCATCTTCATCTTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006435-1-3,2-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=FE(69.8=100)
A:
NA
C2:
PF063096=Torsin=PD(15.9=33.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGATTGTGGCTGAAAACCT
R:
GTTGCCTCGGATCCACTTCTG
Band lengths:
139-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]