BtaINT0153718 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005190 | TSC1
Description
TSC1 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A6QQZ6]
Coordinates
chr11:102979930-102980520:-
Coord C1 exon
chr11:102980451-102980520
Coord A exon
chr11:102980035-102980450
Coord C2 exon
chr11:102979930-102980034
Length
416 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
GTCTTGTTTTCTCTGTATAGAAG
3' ss Score
7.56
Exon sequences
Seq C1 exon
GAAGAGAGGACAGACTCCGCAAGGCCCTGTCTACACAGACAACCCCATGTTCCGAATGACAGAGGATTAG
Seq A exon
GTAAGGCCTCTGGGTAACGGTGGAGCTTGCTTGACTCTTGATGGGTTGGGTTATAGTGTGGAAACGGAAATTCCAGAGCACCACGAAACACTGAAGCCAGAGATAATGAAAAATGTAATTCTAAAAGCCAGCCTCATAATCGCATCCCATGAAAGCTGCTAAGTACTTGTGTCTTGACCTGATCAAACCATGGCTTTATCTGTTCTCTGCAATGTTGAGAAAGAATGGAGAGTTTTGACTTCTGTGGTACCTTGCATTGGATCATTGTAACCTTTTGGCTTTGGGAGCTCCAGAAGAGAGCTGTCTCCCCCATCTTCTTCAGCAGGAGAGTCAGGGTGGGCCTGTCCTGTCACAGTGTGAGCAGTTCTCGCGGGCATGGGGGTCTCCAGCGTGTTTGTCTTGTTTTCTCTGTATAG
Seq C2 exon
AAGAGCTGCACGGAGGCAAGGGATCTGTCACTCTCAGTGATCTTCCAGGGTTTTTAGGAGACCTGGCTTCTGAAGAAGACAGTATTGAGAAGGATAAAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005190:ENSBTAT00000006842:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(3.2=100)
A:
NA
C2:
PF043887=Hamartin=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development