BtaINT0153730 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005190 | TSC1
Description
TSC1 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A6QQZ6]
Coordinates
chr11:102991990-102994430:-
Coord C1 exon
chr11:102994278-102994430
Coord A exon
chr11:102992135-102994277
Coord C2 exon
chr11:102991990-102992134
Length
2143 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGA
5' ss Score
9.78
3' ss Seq
TCCCTCCTTCCCTCCTACAGATG
3' ss Score
12.88
Exon sequences
Seq C1 exon
CACCTCTTGGACAAAATGAATGAATACGTGGGCAAGGCCGCCTCTCGGTTATCCGCCCTCTTGCTACTGGGCCACGTCGTGAGGCTGCAGCCGTCATGGAAGCATAAGCTCTCTCAAGCACCTCTTTTGCCTTCTCTACTAAAATGTCTCAAG
Seq A exon
GTACGATGTTTGTAAGGATTTGCATGGAATAGCTTCATCATATAATTTCTGAAATTCTGAGTACCTTAAAACAAGCCAGCTAGATTTTAACTTTGAGAGTTTAAAAACTCCTAGGCGTTTGGTTCTTCTTGTAATGTAACACAGTTCAGACTTGGTACTTAGTCAGGTCTCAGTGCATCACTGTGTCTAGTGCATGTGTGGTCCAAGCAAATACGGTCACTTTTCGGTCAGATTGGTTCAACAATATGCTCTCCCAGCCCTCTTTGATTTCATGATTGTCTAGCCTTTCCTAGTTAGAAATGTACTGGTTTGTCTTGGGGGAATCCCTATTTCTGCATTCTCTTTTGGCTAATAGCAAAATGGCTAAGACTTTAACTATTTAGGAGCAGGTTCTGGTCACAGCTGTAACTGAGGGTTTTTTGGTAGAAGCCCTTACCAGACTGCGTCCTGCTTTTTTTGCACTCAGCTTAGTGCACTATTCTACAGAGTCAGAACCTAAGTAGGGCCTTATGGTTTTAGTTTTGACCATAGCTTACTGAAATACTTAGGGCATTTGTTTAATCTGTTTTAGTTCCTGGACTTGTTTCCTACCTGTAAAATAGGGAAATGTGGGTAATGTGAGCTGCCTGCACCTCCCAGACGTGAGGACGTCCAGTACTGTTGGTTCCAGGGTGGCCACGCCTTTGAAGGTGTCTGACACAGCACCGTGCAGGTTGATTTCTATCTCTGCCAGCAAAGGGCAGCGTTTATCCTTCCTAGAGGTGGGTCTCAGGGAGTCATGGTGGCAGGGCATCATAACGATGTGCATTTAACAGCTTAATTTTTTTAAATGAATGGGTTGATGAGAATATAATCTGATTTTGAGGCACACTGTTTAGTTCAGATTGAAGAATACTTAACCTTTTCCAAAAGAATAAGCCTTGAAAATTACTTACAAAGTGTTAACCCAAACTTTCAGTCAGGATGTTTTGTTAGTGTTTTTGTTTTTGTTTTTTTTAGTCAGAACTCATTACAGATTCTTGATTCTCCTATCAGTATTTTGTGATTTCCTACTAGATATCTGCCATAACAGATGGCTTGGTGCTCGATGTAAAAACTAAATCTATTTAAAACTGTATTTCCAGGTACTTTCCCTGGTGGTCCAGTGGCTCGGACTCCATGCTCCCAGTGCGGGGGGCCCAGGTCCTGACCCTGGTAGGGGGACTAGATCCCACCTGCCACAGCCAAGAGTTCTCATGCCACAGCTGAAAACCCTGCATGCTGCAGCCAAAGACCTCCCATGCTGCAATTGAGACCTGGCACTACCAAATAAATAAAGTCATATTTATTTAAAAAAAAAACAAAAAAAACCAAACTTTATTTCCAGACTCATAGGTTCCTTTTTCATGAGGAATAATGAATGTTCTAACCTGCATGGTGGTCTTTTGTTTAATGTCTTGTTTCTTCAGTCTGAATTCCAGTCACTTGGCAGACATTCATAATTTAATTATGGGTCAGGTGAGCTGCTATAGCTAGTCTGAGTTAATTTATTATTCATTGGTTATTAAGTTCAGTTAGTCTAAATTTGTATGACTTGATGTTTAAATTGTAGATGTGGTCAGAGGTCCCCGTATCTTTTTTATTTTCTGGTCTCTAAATACTGCTGTGAGGTGAGCCACTAAGAAGATTTGTTAGTGCTATACTCATTTCTTATTAAGGTATACTTCTGTTGTGATCCTTTGGAAATAGAGAATGACTTATTCACGTATTAGGTCTTTTTAACTGACTTTTAAAGAGTAAGTACTTCATAATTGGGCTGAATGAACAAGAATAGCAACATTTCTTTGTTCTGTTCAAAAGCAACTCATGCTTCCCGCCAAGGGCTGTTTATAGCACATCCGAAGTATCTGGGTTTGGGGTTTTCTAAGCCACGTTTAAGCGCTGCCCTGCATGAGTTTGGTGCCTGAGTGTAGTCCCTGCAGACTCAGCCTGGTCGAGCTGGTCCTCAGCGGCTTGTGGTTCAGTGTTGTGCCCCAGCATCCTAAGAGGTAGGACAAGTCTATGCCGGCGTTCTAACTTGAGAACCTCTTAAGTGTGCAGATCTAATGCTGCACACCTGAGAGGTGTCTCTTCTCGCTTGACCTTCCCTCCTTCCCTCCTACAG
Seq C2 exon
ATGGACACCGACGTCATTGTCCTCACAACAGGAGTCTTAGTGTTGATAACCATGCTCCCAATGATTCCGCAGTCGGGGAAACAGCACCTTCATGATTTCTTTGATATCTTTGGCCGTCTTTCGTCATGGTGCCTGAAGAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005190:ENSBTAT00000006842:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(38.5=100)
A:
NA
C2:
PF043887=Hamartin=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development