BtaINT0154090 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017783 | TSPYL2
Description
TSPYL2; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BKJ1]
Coordinates
chrX:95957461-95959607:+
Coord C1 exon
chrX:95957461-95958276
Coord A exon
chrX:95958277-95959529
Coord C2 exon
chrX:95959530-95959607
Length
1253 bp
Sequences
Splice sites
5' ss Seq
GCAGTATCC
5' ss Score
-5.12
3' ss Seq
TAAACTGCTCCCTCCATCAGTTC
3' ss Score
6.75
Exon sequences
Seq C1 exon
ATGGACCGCGCAGATGAAGGGCCTCCGGCCAAGGCCCGCCGCCTTAGTGGCTCTGAGCCCCCTCAGAGCGAGCTGCTGCTGCCGCCGCCGCCGCCACCTCCTCCTCCTCCTCCTCCTCTCCTGCGCCTGCCCCTGCCTCCACCTCAGCAGCGCCCGAGGCTCCAGGAGGAAACCGAGGCGGCACAGGTGCTGGCTGACATGAGGGGGGTGGGACTGGGCCCCGCTCTGCCCCCGCCTCCGCCTTATGTCATTCTCGAGGAGGGGGGTATCCGCGCGTACTTCACCCTGGGGGCTGGGGGTCCCGGCTGGGAGCCCGCAGTCGAGTCAGGGTACGGGGAGTCGCCCCCTCTCGCGGAGAGCCTAGAAACGCTCTCTCCCTCAGAGGTTTCTGGGGAAAGCCTGGAGATTGACTTCCAGGTGACGGAGCCCAGCAGCTTTGCAGGAGAGAAGGCCCTAGAAACCTGTAGCGCAGGGGGGCGGGGGTACCAGAGGTTAGCCGGTCCAAGAGGGAGAGAAGAGACCGTCATCATCGTGGAAGATGACGACGAGGATGAAAAGGAAAGCGTGAGGAAGAGGAGGAGGAGGAGGAAGAGGAAGCCCAGGAAGGTGAAGAGGGAAAGCCCAGAGAAGAATGCTGAGAAGATAGAGTGCATCCTGCAGGCTCTGGAAAACATTCAGCTAGACCTGGAGGCGGTGAATATCAAGGCTGGCAAGGCCTTCCTCCGTCTCAAGCGCAAGTTCATCCAGATGCGGAGACCCTTCCTGGAGCGCAGAGATCTTATCATCCAGAATATCCCAGGCTTCTGGGTCAAAGCA
Seq A exon
GTATCCTTGTCATCTATACTCATGGGCCAGGAGCCCATGACCAGAATTGGGTGGGGGGCGGTGGGAGGAGGGACAGACTGGGTGAAAGGGTGTGGGGGCGGGCCCCTGTTGGAAGAATGAGGAAGTCTGGTGGAGAAGGGATGGAAGGAGTGTGGCAAAACATCAGAGAAGCTGAACTGGGGATGGTGAAGGGGGAGGGGGGGCCATTAAAACTGGACCACATATGGGAAAAGGAAAGAGAAGGAGCATAGCATTAAAAGAAAATGGATCACAGACAGTGAAAGGGGGAGGACAGAGACACACAGCAGAAAAATTGGATCAGAGATGGTAAAAGGAGGAGTGGGGAGAGGGGGACATGGAAGATAAACTGACTCAGAGACAGTGAAGAGGGAGGGGAAGGGCATACAGCAGAGAATTGGCCCAGAAAGGGTACCCAAGTCACACATGGCTGTGCATGCCTAGGTTTCTACTTAGATTCTAGTGAGACCCCAATCCTGGCTGGAGAGGAGGGGGCCAGAGCCCTGAAGAATCAGGAAAAGGGGTATCTAGGAATAGAGATTAAGAAGTTAAATGAAGGAAATAATAATAATTCACTGTTGGTGATAAGCTGATCTCTGGGGAACCATGTAACATATTAGAAACACATGGGTTTAACATCCTAATAGAATTACATGGACACAGACACTTGACACTGTCATACATACATATCACATGATCACAGGCCCCCAGTACCCAGGCACAGTATTATGTGGCCACAGGTCCCCAGTACCCAGACCACACCATCACCTGGACATGAGCTCTCAGACAGACACACAACATTATGTGGACACATACCCATAACACCCAAATATATAACATCATGTGACAACAGGCCATCAGCAACCAGATATAGTATCATTTGGATGTGGGCCTTTAACCCCCAGACACACAATGTCTTTTGTGAACACTCAGAGACACAACATCACTTGGGTATAGACTCCCAGCACCCAAACACACAGCAGATATGAACCATGGCAGGGCCACCTAATATAGAGGTTTGATATTTTTAAACACAGGCTCTCACCACATGGTATCATGGGAATAAAAGTATGGGTCTTGTTGCATGACCTACTTGCTCCACATACATCACATGAGCACAAAAGGAATTCTGCTCCAGCCTCTCTTTTGTTCTGCCCTGCATAGCCCTGCCTGGCCTTCCTTCCCTCCTTCTCATTGAACAGTCACTCCTTGACCTAAACTGCTCCCTCCATCAG
Seq C2 exon
TTCCTCAACCACCCCAAAATTTCAATCTTGATCAACCAACGCGATGAAGACATTTTCCGCTACTTGACCAACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017783:ENSBTAT00000023648:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.662 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095613=NAP=PU(29.9=20.6)
A:
NA
C2:
PF0095613=NAP=FE(13.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGACCGTCATCATCGTGGA
R:
TGTCTTCATCGCGTTGGTTGA
Band lengths:
353-1606
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]