HsaINT0173914 @ hg19
Intron Retention
Gene
ENSG00000184205 | TSPYL2
Description
TSPY-like 2 [Source:HGNC Symbol;Acc:24358]
Coordinates
chrX:53111542-53113804:+
Coord C1 exon
chrX:53111542-53112487
Coord A exon
chrX:53112488-53113726
Coord C2 exon
chrX:53113727-53113804
Length
1239 bp
Sequences
Splice sites
5' ss Seq
GCAGTATCC
5' ss Score
-5.12
3' ss Seq
TAAACTGCTCCACTCATCAGTTC
3' ss Score
3.66
Exon sequences
Seq C1 exon
GAACGCCAGAGCGAGGTGGTGAGGAGAGCTGGTTGCGTGAGTCTCCTCAGCTCTGCTTACCGGTGCGACTAGCGGCAGCGACGCGGCTAAAAGCGAAGGGGCGAGTGCGAGTCCCCTGAGCTGTACGAACGCGGTCGCCATGGACCGCCCAGATGAGGGGCCTCCGGCCAAGACCCGCCGCCTGAGCAGCTCCGAGTCTCCACAGCGCGACCCGCCCCCGCCGCCGCCGCCGCCGCCGCTCCTCCGACTGCCGCTGCCTCCACCCCAGCAGCGCCCGAGGCTCCAGGAGGAAACGGAGGCGGCACAGGTGCTGGCCGATATGAGGGGGGTGGGACTGGGCCCCGCGCTGCCCCCGCCGCCTCCCTATGTCATTCTCGAGGAGGGGGGGATCCGCGCATACTTCACGCTCGGTGCTGAGTGTCCCGGCTGGGATTCTACCATCGAGTCGGGGTATGGGGAGGCGCCCCCGCCCACGGAGAGCCTGGAAGCACTCCCCACTCCTGAGGCCTCGGGGGGGAGCCTGGAAATCGATTTTCAGGTTGTACAGTCGAGCAGTTTTGGTGGAGAGGGGGCCCTAGAAACCTGTAGCGCAGTGGGGTGGGCGCCCCAGAGGTTAGTTGACCCGAAGAGCAAGGAAGAGGCGATCATCATAGTGGAGGATGAGGATGAGGATGAGCGGGAGAGTATGAGGAGCAGCAGGAGGCGGCGGCGGCGGCGGAGGAGGAAGCAGAGGAAGGTGAAGAGGGAAAGCAGAGAGAGAAATGCCGAGAGGATGGAGAGCATCCTGCAGGCACTGGAGGATATTCAGCTGGATCTGGAGGCAGTGAACATCAAGGCAGGCAAAGCCTTCCTGCGTCTCAAGCGCAAGTTCATCCAGATGCGAAGACCCTTCCTGGAGCGCAGAGACCTCATCATCCAGCATATCCCAGGCTTCTGGGTCAAAGCA
Seq A exon
GTATCCTTCTAATCGATACTCCGTAGGTCAGAAGCCCGTGACAGGAAAGGGGAAGGTGGGGGAGGGACAGAAAAGGTAAAGCGGGTGGAGGAGAGCCAGAGGTGGGCATGATCCCCCTATCGGAAGACGGACTAGACTGGGTGGAAGAGGGATGGAAGGAGGAGGGCAAAACAGCAGAGAAGCTGGACTGGAGATGATGAAGGGTGGTGGAGGGGGGGCGGACATAAAAACTGGACCACAGATGGGAAAGGGGGAAGAGGAGGAACATAGCATTAAAAAAAGGATCACAGATGATAAAAAGGGGGAGGGTAGTAAAGGGGCACACAGCAAAAAAATTGGACCAGAGATGGTGAAAGGAGGAGGGGAGGGGCACGTAGAAGATGAACTGACTCAGAGACCTTGAAGAGGGAGGGGAATGGCACACAGCAGAGAAACTGCCCAGAAAGGGTGCTTGAGCCATACAAGGCTCTGTAAACCTAGATTTTTGCTTAAGATACTAGGAGACCCCAATCCTGGCTGGAGTGCCTTGCATTGGAGGGAGGGGGGCTGGAGCCCCTGAAAGATCAAGAGAGGGAGTGTCTAGGTATAGAGAAAAAGGAGTTAAATGAAGGAAAGGGGAGAGTAGACACATACACATACATGTAACATGTTAGGAACATGAGTCGAACATCCTAATAGAATTATGTGGATACAGACCCTTAGCCCTCATATGAAACAGCACATGGTAAGAGGCCCTTAGCACCCAGGCATACAATATCATTTAGACATAGGACCTCAGCTCCTAGACACAGTATTATGTGACCACAGGTCCTCAGCATGTAGACACATGGCATAACTTGACCACAAGCCATCAGAGCCATTCACACATCATGTGGACATGGACCTTCAACACCCATACATACAATAACGTGACCACAGGCCCTCAGCAATCAGTTACAGCATCACTTGGACATGGCCCTTAAGCCCCCAGACGTGCATTTTGTGAACACAAGCTTTCAGCACCCAGTGACATATACCACATGCACATGGATTGTCGACACCCTGTAGGGCCACCTAACATAGAGGTTTATCATGGGAATAAGTATGGGTTATGTCCCATGACTCACTTGCTTTATACACACCACATAAGCACAGAAGGAATCCTCATGCTCCAGCCTCTCTTACTGTGCCCTTCCTGGCCTTCCCTCCCTCCCTTTCACGGAATAGTCAATCCTTGACCTAAACTGCTCCACTCATCAG
Seq C2 exon
TTCCTCAACCACCCCAGAATTTCAATTTTGATCAACCGACGTGATGAAGACATTTTCCGCTACTTGACCAATCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184205-TSPYL2:NM_022117:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095613=NAP=PU(29.9=20.8)
A:
NA
C2:
PF0095613=NAP=FE(13.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGAGTATGAGGAGCAGCA
R:
TGCAGATTGGTCAAGTAGCGG
Band lengths:
346-1585
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)