HsaALTA0009082-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000184205 | TSPYL2
Description
TSPY-like 2 [Source:HGNC Symbol;Acc:24358]
Coordinates
chrX:53111549-53113770:+
Coord C1 exon
chrX:53111549-53112487
Coord A exon
NA
Coord C2 exon
chrX:53113727-53113770
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCAGTATCC
5' ss Score
-5.12
3' ss Seq
TAAACTGCTCCACTCATCAGTTC
3' ss Score
3.66
Exon sequences
Seq C1 exon
CGGGGTATGGGGAGGCGCCCCCGCCCACGGAGAGCCTGGAAGCACTCCCCACTCCTGAGGCCTCGGGGGGGAGCCTGGAAATCGATTTTCAGGTTGTACAGTCGAGCAGTTTTGGTGGAGAGGGGGCCCTAGAAACCTGTAGCGCAGTGGGGTGGGCGCCCCAGAGGTTAGTTGACCCGAAGAGCAAGGAAGAGGCGATCATCATAGTGGAGGATGAGGATGAGGATGAGCGGGAGAGTATGAGGAGCAGCAGGAGGCGGCGGCGGCGGCGGAGGAGGAAGCAGAGGAAGGTGAAGAGGGAAAGCAGAGAGAGAAATGCCGAGAGGATGGAGAGCATCCTGCAGGCACTGGAGGATATTCAGCTGGATCTGGAGGCAGTGAACATCAAGGCAGGCAAAGCCTTCCTGCGTCTCAAGCGCAAGTTCATCCAGATGCGAAGACCCTTCCTGGAGCGCAGAGACCTCATCATCCAGCATATCCCAGGCTTCTGGGTCAAAGCA
Seq A exon
NA
Seq C2 exon
TTCCTCAACCACCCCAGAATTTCAATTTTGATCAACCGACGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184205-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=NA C2=0.273
Domain overlap (PFAM):
C1:
PF0095613=NAP=PU(29.9=20.8)
A:
NA
C2:
PF0095613=NAP=FE(13.4=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCCAGATGCGAAGACCCT
R:
TGAAATTCTGGGGTGGTTGAGG
Band lengths:
101-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)