RnoALTA0042563-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000061782 | Tspyl2
Description
TSPY-like 2 [Source:RGD Symbol;Acc:1563283]
Coordinates
chrX:22411608-22413714:-
Coord C1 exon
chrX:22412815-22413714
Coord A exon
chrX:22411669-22411685
Coord C2 exon
chrX:22411608-22411668
Length
17 bp
Sequences
Splice sites
5' ss Seq
GCAGTATCC
5' ss Score
-5.12
3' ss Seq
TAAACTGCTCCACTCATTAGTTC
3' ss Score
2.74
Exon sequences
Seq C1 exon
GGTTCGGGGAGGTCCCGTCCACAGAGATCATAGAAACACTCCCGTCTTCAGAAGCCTCTAGGGGAAGCCTGGAAATTGACTTTCAGGTTGCAGAACACAGCAGCCTTGGAGAGAAGGCCCTAGAAACCTGTAGCTTTGGAGGGTGGGGGCCCCAGATGTTAGTCGGTCCAAAGAGGAAGGAGGAGGCTATCATCATAGTGGAAGATGAGGATGAGGATGAAAAGGAAAGTATGAGGAGGCTGCAGCAGCGTCGGCGGAGGAGGAGAAGGAGGAGGAGGAGGAAGCAGAGGAAGGCGAAGGAGAGCAGAGAGAGGAGTGCGCAGAGGATGGAAAGCATACTGCAGGCCCTGGAGAGCATTCAAATGGACCTGGAGGCGGTGAACATCAAGGCAGGCAAGGCCTTCTTGCGTCTCAAACGCAAGTTCATCCAGATGCGAAGACCCTTTTTGGAGCGCAGAGACCTCATCATCCAGCATATCCCAGGCTTCTGGGTCAAAGCA
Seq A exon
TTCCTCAACCACCCCAG
Seq C2 exon
AATTTCAATCTTGATCAACCAACGCGATGAAGACATCTTCCGCTACTTGACCAATCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061782-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.558 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095613=NAP=PU(30.1=21.0)
A:
NA
C2:
PF0095613=NAP=FE(13.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCCAGATGCGAAGACCCT
R:
TGTCTTCATCGCGTTGGTTGA
Band lengths:
112-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]