HsaALTA0009082-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000184205 | TSPYL2
Description
TSPY like 2 [Source:HGNC Symbol;Acc:HGNC:24358]
Coordinates
chrX:53082367-53084622:+
Coord C1 exon
chrX:53082367-53083305
Coord A exon
NA
Coord C2 exon
chrX:53084545-53084622
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCAGTATCC
5' ss Score
-5.12
3' ss Seq
TAAACTGCTCCACTCATCAGTTC
3' ss Score
3.66
Exon sequences
Seq C1 exon
CGGGGTATGGGGAGGCGCCCCCGCCCACGGAGAGCCTGGAAGCACTCCCCACTCCTGAGGCCTCGGGGGGGAGCCTGGAAATCGATTTTCAGGTTGTACAGTCGAGCAGTTTTGGTGGAGAGGGGGCCCTAGAAACCTGTAGCGCAGTGGGGTGGGCGCCCCAGAGGTTAGTTGACCCGAAGAGCAAGGAAGAGGCGATCATCATAGTGGAGGATGAGGATGAGGATGAGCGGGAGAGTATGAGGAGCAGCAGGAGGCGGCGGCGGCGGCGGAGGAGGAAGCAGAGGAAGGTGAAGAGGGAAAGCAGAGAGAGAAATGCCGAGAGGATGGAGAGCATCCTGCAGGCACTGGAGGATATTCAGCTGGATCTGGAGGCAGTGAACATCAAGGCAGGCAAAGCCTTCCTGCGTCTCAAGCGCAAGTTCATCCAGATGCGAAGACCCTTCCTGGAGCGCAGAGACCTCATCATCCAGCATATCCCAGGCTTCTGGGTCAAAGCA
Seq A exon
NA
Seq C2 exon
TTCCTCAACCACCCCAGAATTTCAATTTTGATCAACCGACGTGATGAAGACATTTTCCGCTACTTGACCAATCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184205-1-4,1-3,1-2-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.532 A=NA C2=0.267
Domain overlap (PFAM):
C1:
PF0095613=NAP=PU(29.9=20.8)
A:
NA
C2:
PF0095613=NAP=FE(13.4=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCATATCCCAGGCTTCTG
R:
TGCAGATTGGTCAAGTAGCGG
Band lengths:
108-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains